Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02571 ATGGCAATGACATTTGAAACGGGTCGTTTTAACCTATCGCGCCCAACGGCCTCAAAGCACTTGTTATTCTCCTCCAGTATCAAACGACCAAAACCCGTTTCGGTTCATTCTTCTCGATTCTTCCATTGCCGATCGAAACGCCTCGTTTTGACGCAGAGATTCGCAGTGAAAGCCTGCGTGGTGAATGTCGAGCAGAAGAACGTCGCCGCAGAATCAGGAGAGTGGGGGAAGGTTTCCGCGGTGCTCTTCGACATGGACGGCGTGCTTTGCAATAGCGAAGAGCCTTCCAGAAAAGCCGGCGTCGATTTGTTCGCCGAGATGGGCCTCGAAGTCACCGTTGACGATTTTGTGCCGTTTACGGGAACCGGAGAAGCTAACTTTTTGGGAGGTGTTGCTTCTGTCAAGGGAGTTAAAGGATTTGACCCAGAAGCTGCCAAAAAAAGGTTCTTTGAAATATATTTAGATAAGTTTGCAAAACCAGATTCTGGAATAGGATTTCCAGGTGCCCTTGAACTTATTTCTCAGTGTAAAAGTAAAGGGCTTAAAGTGGCTGTTGCATCTAGTGCTGATCGTGTAAAGGTTGATGCAAATCTAGCCGCTGCTGGTTTACCATTGTCAATGTTCGATGTGATTGTCTCTGCAGATGCTTTTGAGAATTTGAAACCTGCTCCTGATATTTTCTTAGCTGCATCAAGAATATTGAATGTGCCCCCTTGTGAGTGTATTGTTATAGAAGATGCGCTAGCTGGAGTGCAAGCTGCCAAAGCTGCGCAAATGCGATGCATAGCTGTAAGGACCTCATTATCAGATGAGGTTTTGGAATCTGCCGAACCAACATTTATCCGGGATGACATAGGAAGTGTTTCACTTGAGGATATTCTTTGTGGTGGCTCTGTTGGATATAATGAGAGGATGCAGGGCTCTGAAACTCTAAATAATTTTGCAGAGTCTTCATCTGCTGTGCTTGCTGGAGGGTTGCAGGGTTCTCGGCGAGATATACTGAGATTTGGAAGTCTGGGCATTGCTATCTCTTGCCTTATCTTCACCTTAAGTAACTGGAAGGCAATGCAATATGCTTCCCCGAAGGCAGTTTGGAATCAGTTGTTTGGTGTTACCCAGCCACCCTTGGAGCAGAAAGATAACTCAAGATATGATAGGATCCAGCAATTTGTGAACTACATATCTGATCTGGAAAGCAGGGGAAGTGCTCAGATAGTTCCAGAATTTCCATCTAAACTTGATTGGCTGAATACAGCTCCACTTCAGTTTCGCAGGGATCTGAAAGGAAAAATTGTATTGCTGGATTTCTGGACTTATTGTTGTATAAACTGTATGCACGTGTTGCCAGACTTAGATGCTTTAGAGAAAAAATACATAGATACGCCGTTTGTTGTTGTGGGTGTTCATTCTGCCAAGTTTGATAACGAGAAAGATTCTGAAGCAATTCGCAATGCAGTTCTACGCTATGGAATTTCTCACCCAGTTGTCAACGATGGAGACATGTTTCTTTGGAGGAACTTGGGTATAAATTCATGGCCAACATTTGCTATAATTGGCCCTGATGGTAAGCTTCTTGCACAACTAGCAGGAGAAGGTCACAAGAAGGATCTAGATGATTTTGTGGAGGCTGCACTTCTATTTTATGGAAAGCAGAACATGCTGGACAATACGCCAATTTCCTTGAGTTTGGAGAAAGATAATGATCCACGCCTGTTGACTTCTCCATTAAAGTTTCCTGGAAAGCTAGCAGTTGATGTCCTTAATAACAGGCTTTTTATTTCTGACAGCAACCATAATCGCATAGTGGTTACTGACCTTGATGGCAATTTTATTGTACAAATTGGGAGCAGCGGGGAGGAAGGTTTGAAGGATGGTTCCTTTGATGATGCTACTTTTAACCGTCCTCAGGGCCTTGCTTATAATGCAAAGAAAAACATCCTTTATGTTGCAGACACTGAAAACCATGCTTTGAGGGAAATTGATTTTGTTAATGAGAAAGTGCGGACCCTTGCTGGAAATGGGACCAAGGGCTCTGATTATGTTGGAGGTGGAAAAGGAGACACACAGCTTCTCAATTCCCCTTGGGATGTCTGCTTTCATCCATTTGAAGAAAAAATTTATATTGCCATGGCTGGCCAGCATCAGATTTGGGAGCACAATTTATTGGCGGCAACTTCGAGAGCATTTAGTGGTGATGGCTATGAAAGAAATTTAAATGGATCAAGTTCTACAAACACGTCATTTGCGCAACCTTCTGGTCTTTCATTGTCTCAAGATCTAAGCGAGATCTACATTGCTGATAGTGAGAGTAGTTCAATTCGAGCTGTGGATCTTAAAACAGGAGGATCTCAGTTGTTAGCTGGTGGTGACCCAATGTTCGCTGACAATTTGTTTAAGTTTGGTGATCAAGATGGAATTGGCTCTGATGTACTTCTTCAACATCCATTGGGGGTTTTGTGTGGAAATGATGGTGAAATTTATATCGCAGATAGCTACAATCACAAGATCAAGAAGCTAGATCCAACTAGTAAAAGAGTTAACACCATTGCAGGAACTGGAAAAGCTGGTTTCAAAGATGGAACGGCTGTAAAAGCTCAGCTCTCTGAACCGGCAGGAATTGTTGAAGGGAACAATGGGAGATTATTTATATCTGACACAAACAACAGCTTAATTCGATATCTAGATTTAAACGCTGATGAAACTGAACTCCGTACCTTGGAGCTTAAAGGAATTCAGCCTCCTAAACCAAAATCAAGATCTTTTAAACGTCTTAGACGGCGAGCATCAGCCGATACATTGCCAATTACGATTGATGCCATTTCATCAAATGAGGGAAACTTGTCTATTAAAATATCATTACCAAGCGAGTATCATTTCTCAAAGGAAGCACGCAGTAAATTCAGCGTGGATATTGAACCTGAAGATGCTGTGAATATTGAACCCCTCGATGGATTCATTAGTCCAGAAGGATCTGCAACTCTTCACTTTAAGAGATCCTCTAACTCTGCTTCAATGGGAAGAATTAATTGTAAGGTATACTATTGCAAGGAAGATGAAGTTTGTTTGTACCAGTCTTTGCTGTTTGAGGTCCCCTTCCCAGAGGGAGTTTCTAGCCCTGCCAAAGCAGACGTCACTCTTGCACATCTTGTGAAACCCAAAACTTCAACCAACAACTTACAGCAGACAGTTGCTCCGTGA 3198 0.4281 MAMTFETGRFNLSRPTASKHLLFSSSIKRPKPVSVHSSRFFHCRSKRLVLTQRFAVKACVVNVEQKNVAAESGEWGKVSAVLFDMDGVLCNSEEPSRKAGVDLFAEMGLEVTVDDFVPFTGTGEANFLGGVASVKGVKGFDPEAAKKRFFEIYLDKFAKPDSGIGFPGALELISQCKSKGLKVAVASSADRVKVDANLAAAGLPLSMFDVIVSADAFENLKPAPDIFLAASRILNVPPCECIVIEDALAGVQAAKAAQMRCIAVRTSLSDEVLESAEPTFIRDDIGSVSLEDILCGGSVGYNERMQGSETLNNFAESSSAVLAGGLQGSRRDILRFGSLGIAISCLIFTLSNWKAMQYASPKAVWNQLFGVTQPPLEQKDNSRYDRIQQFVNYISDLESRGSAQIVPEFPSKLDWLNTAPLQFRRDLKGKIVLLDFWTYCCINCMHVLPDLDALEKKYIDTPFVVVGVHSAKFDNEKDSEAIRNAVLRYGISHPVVNDGDMFLWRNLGINSWPTFAIIGPDGKLLAQLAGEGHKKDLDDFVEAALLFYGKQNMLDNTPISLSLEKDNDPRLLTSPLKFPGKLAVDVLNNRLFISDSNHNRIVVTDLDGNFIVQIGSSGEEGLKDGSFDDATFNRPQGLAYNAKKNILYVADTENHALREIDFVNEKVRTLAGNGTKGSDYVGGGKGDTQLLNSPWDVCFHPFEEKIYIAMAGQHQIWEHNLLAATSRAFSGDGYERNLNGSSSTNTSFAQPSGLSLSQDLSEIYIADSESSSIRAVDLKTGGSQLLAGGDPMFADNLFKFGDQDGIGSDVLLQHPLGVLCGNDGEIYIADSYNHKIKKLDPTSKRVNTIAGTGKAGFKDGTAVKAQLSEPAGIVEGNNGRLFISDTNNSLIRYLDLNADETELRTLELKGIQPPKPKSRSFKRLRRRASADTLPITIDAISSNEGNLSIKISLPSEYHFSKEARSKFSVDIEPEDAVNIEPLDGFISPEGSATLHFKRSSNSASMGRINCKVYYCKEDEVCLYQSLLFEVPFPEGVSSPAKADVTLAHLVKPKTSTNNLQQTVAP 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02571 1065 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 77 287 - -
Phco2g02571 1065 CDD NHL-2_like 614 955 IPR045302 -
Phco2g02571 1065 Pfam NHL repeat 632 657 IPR001258 GO:0005515
Phco2g02571 1065 FunFam NHL repeat-containing protein 2 384 548 - -
Phco2g02571 1065 SUPERFAMILY Thioredoxin-like 404 542 IPR036249 -
Phco2g02571 1065 Gene3D - 552 718 IPR011042 -
Phco2g02571 1065 Gene3D - 791 894 IPR011042 -
Phco2g02571 1065 FunFam NHL repeat-containing protein 2 561 717 - -
Phco2g02571 1065 NCBIfam HAD-IA family hydrolase 170 264 IPR006439 -
Phco2g02571 1065 ProSiteProfiles NHL repeat profile. 812 842 IPR001258 GO:0005515
Phco2g02571 1065 SUPERFAMILY NHL repeat 570 897 - -
Phco2g02571 1065 CDD HAD_BPGM-like 80 266 - -
Phco2g02571 1065 PANTHER NHL REPEAT-CONTAINING PROTEIN 2 104 1063 - -
Phco2g02571 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 208 224 IPR006439 -
Phco2g02571 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 226 246 IPR006439 -
Phco2g02571 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 78 89 IPR006439 -
Phco2g02571 1065 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 176 189 IPR006439 -
Phco2g02571 1065 SUPERFAMILY HAD-like 74 291 IPR036412 -
Phco2g02571 1065 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 77 287 - -
Phco2g02571 1065 FunFam Chloroplast protein HCF243 792 896 - -
Phco2g02571 1065 Gene3D - 80 270 IPR023214 -
Phco2g02571 1065 Gene3D Putative phosphatase; domain 2 91 162 IPR023198 -
Phco2g02571 1065 Pfam Haloacid dehalogenase-like hydrolase 81 264 IPR041492 -
Phco2g02571 1065 Pfam Thioredoxin-like 429 523 IPR012336 -
Phco2g02571 1065 ProSiteProfiles Thioredoxin domain profile. 400 546 IPR013766 -
Phco2g02571 1065 SMART LY_2 569 611 IPR000033 -
Phco2g02571 1065 Gene3D Glutaredoxin 376 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02571 Phco-Chr2 55520146 55536723 Dispersed