Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02538 ATGGGGAGACACTCTTGCTGCTACAAACAGAAGCTTCGTAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACTAAACATGGCCATGGATGTTGGAGCTCAGTTCCAAAACTAGCTGGCCTTCAGAGGTGTGGCAAGAGCTGCAGGTTAAGGTGGATTAATTACCTTAGGCCAGATTTGAAGAGAGGGGCGTTCTCACAGCAAGAAGAGAACTCCATAATTGAACTTCATGCAGTCCTTGGCAACAGGTGGTCGCAGATCGCAGCTCAGTTACCGGGAAGAACTGATAATGAGATAAAGAATCTATGGAATTCCTGTCTGAAGAAGAAGCTTAGGCAAAGAGGCATTGACCCAAACACACACCAACCCCTCTATGAGGTTGAGAATGACAAGGACAAGCCTCTTACAGCTGACAGAAGCAACCAGAAAGCCTCCAATGAGGTGAGTGTTGTTGAGCCACCAAAACAAAAGCCAATAACTACTACTACTTCTATGCCTATGGATAGATATCCCGTTGAAGTTTCTGCTACCTCAAAGATCAGCAGTGGCAACAACAACAGCAGCAGCACCCTAGACAGGTTTGGCACCTGCCATGACAACAACAGCTCCATCGCTAGTTCTGATATGATGGGAATGGGATATTTCCCTTTCCAGCACCTGAACTATGGACCAAACATGGGACTCACTACAGCCAACACCAACAACACCCCGCTTTGTTTCATTCCTAGTTCCACTTCTTCCCAAATGATGTCCGAGCTGAATTCCACCATGCTCCATTCTGTGTTCTCAACTCATGTAAAGCCCACTGTTAGCCTCCAGTCTAATAACAACAACCCTTCGTCCATATTCTCTGACGGGGTTCAGAACTGGGAAGGAAGTACCTTCAGTAACAACAACAACAATGCAAGCAAAAGCAATGGGAGCAGTAGCTGCAGCATCCAATTACAAAGCAGCACTAACTTCCTTGATCATGGCAGCACAATAACATGGGGGCTGCAGGCAGAATCTGCCACCAAGGCAGATAATAAAGATGCTCATTCTTCTCATGTGGTACCCTTGCAGTCAGAACAAGAAGACATCAAATGGTCTGAGTATCTGAACAACACCCCTTTTTTCCTGGGAACCACAGTGCAGCAGCATCAAACCACTCACTCTCTCTACAGTGATGAGGTGAAGCCAGAAACAGCCTTCATAGCAGACGAATCAAGTACCAGTTGGCACCACAGCCAGCATTTTCAACCCTCGGATATATATAGCAAAGATCTTCGGAGATTTTCAGTGGCCTTTGGACAAACCCTGTAA 1317 0.4624 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENSIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHQPLYEVENDKDKPLTADRSNQKASNEVSVVEPPKQKPITTTTSMPMDRYPVEVSATSKISSGNNNSSSTLDRFGTCHDNNSSIASSDMMGMGYFPFQHLNYGPNMGLTTANTNNTPLCFIPSSTSSQMMSELNSTMLHSVFSTHVKPTVSLQSNNNNPSSIFSDGVQNWEGSTFSNNNNNASKSNGSSSCSIQLQSSTNFLDHGSTITWGLQAESATKADNKDAHSSHVVPLQSEQEDIKWSEYLNNTPFFLGTTVQQHQTTHSLYSDEVKPETAFIADESSTSWHHSQHFQPSDIYSKDLRRFSVAFGQTL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02538 438 Gene3D - 11 67 - -
Phco2g02538 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Phco2g02538 438 PANTHER MYB DOMAIN PROTEIN 55 1 338 - -
Phco2g02538 438 FunFam MYB transcription factor 68 140 - -
Phco2g02538 438 SMART sant 66 114 IPR001005 -
Phco2g02538 438 SMART sant 13 63 IPR001005 -
Phco2g02538 438 MobiDBLite consensus disorder prediction 122 170 - -
Phco2g02538 438 MobiDBLite consensus disorder prediction 129 143 - -
Phco2g02538 438 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco2g02538 438 CDD SANT 17 61 IPR001005 -
Phco2g02538 438 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco2g02538 438 FunFam Myb transcription factor 11 67 - -
Phco2g02538 438 MobiDBLite consensus disorder prediction 144 170 - -
Phco2g02538 438 CDD SANT 69 109 IPR001005 -
Phco2g02538 438 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco2g02538 438 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Phco2g02538 438 Gene3D - 68 149 - -
Phco2g02538 438 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco2g02538 438 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02538 Phco-Chr2 55271957 55273581 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g02538 Myb_DNA-binding 3e-15 CL0123