Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02522 ATGGCTTCAATTCGGTTACCCCTAGCAACATTCTTCTTAGTTCTCTCCGCTTCTTATCTCCAGATTGCCGGGGCGGAAGCTGAACAGTTGACTACTCTCAATCTTAAATCTCCTATTCTTCAGAAATCTATTGCTAAACAGATTAACGAAAATCCTGAGGCAGGATGGGAGGCTGCTATAAATTCTCGTTTCTCCAATTATACAGTTGAACAATTTAAGCGCCTTCTTGGAGTCAAACAGACGCCTAAGATCGAACTCAGAAGTACACCCGTTATTTCTCATCCAAAATCATTGAAATTGCCGGTGAATTTTGATGCAAGGACAGCTTGGTCGCAGTGTAACACTATTGGAAGAATTCTAGCAACTTTTAATACATTCAAGGGTCACTGTGGTTCTTGTTGGGCATTTGGTGCTGTAGAATCATTGTCAGATCGCTTTTGCATTCATTTTGATGTTAATATTTCTCTCTCTGTTAATGACCTTCTTGCATGCTGCGGCTTTCTGTGTGGATCTGGGTGTGACGGAGGATATCCCTTATACGCATGGCGATACTTAGCTCACCACGGTGTTGTCACTGAAGAGTGTGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCAGCTTATCGGACTCCCAAGTGTGTTAAAAAATGTGTAAATGGGAACCAGCTGTGGAAGAAGTCAAAGCACTTTAGTGTCAATGCCTACAAGGTCAACTCTAATCCCCATGATATCATGGCAGAAGTGTACACAAATGGGCCTGTTGAGGTCGCCTTTACTGTTTATGAGGATTTTGCTCATTACAAGTCAGGAGTTTACAAACACGTCACAGGTTATGCACTAGGCGGTCATGCAGTGAAGCTAATTGGGTGGGGAACAACTGATGATGGACAAGACTATTGGCTTCTCGCAAATCAGTGGAACAGAGAATGGGGAGATGATGGTTACTTCAAGATCCGAAGGGGGACAAACGAATGCGGGATTGAAGAGGAGGTAACTGCTGGTTTGCCTTCTACCAAAAACCTCGTAAGAGAGGTGACTGCTATGGATGCTGACGCTGCTGTTTCCTTCTGA 1086 0.4374 MASIRLPLATFFLVLSASYLQIAGAEAEQLTTLNLKSPILQKSIAKQINENPEAGWEAAINSRFSNYTVEQFKRLLGVKQTPKIELRSTPVISHPKSLKLPVNFDARTAWSQCNTIGRILATFNTFKGHCGSCWAFGAVESLSDRFCIHFDVNISLSVNDLLACCGFLCGSGCDGGYPLYAWRYLAHHGVVTEECDPYFDQIGCSHPGCEPAYRTPKCVKKCVNGNQLWKKSKHFSVNAYKVNSNPHDIMAEVYTNGPVEVAFTVYEDFAHYKSGVYKHVTGYALGGHAVKLIGWGTTDDGQDYWLLANQWNREWGDDGYFKIRRGTNECGIEEEVTAGLPSTKNLVREVTAMDADAAVSF 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02522 361 Pfam Peptidase family C1 propeptide 40 82 IPR012599 GO:0004197|GO:0050790
Phco2g02522 361 PRINTS Papain cysteine protease (C1) family signature 127 142 IPR000668 GO:0006508|GO:0008234
Phco2g02522 361 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Phco2g02522 361 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Phco2g02522 361 Pfam Papain family cysteine protease 101 339 IPR000668 GO:0006508|GO:0008234
Phco2g02522 361 FunFam cathepsin B-like protease 2 33 346 - -
Phco2g02522 361 SUPERFAMILY Cysteine proteinases 44 341 IPR038765 -
Phco2g02522 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Phco2g02522 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 48 333 IPR013128 GO:0008234
Phco2g02522 361 SMART pept_c1 100 340 IPR000668 GO:0006508|GO:0008234
Phco2g02522 361 CDD Peptidase_C1A_CathepsinB 101 339 - -
Phco2g02522 361 Gene3D Cysteine proteinases 31 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02522 Phco-Chr2 55145556 55154186 Transposed