Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02511 ATGGGGAGGCATTCCTGCTGTTACAAGCAGAAACTTCGGAAGGGTCTTTGGTCACCAGAGGAGGATGAGAAACTTCTGAGGCATATTACTAAGTATGGTCATGGTTGTTGGAGCTCGGTTCCTAAGCAAGCAGGTTTGCAGAGGTGCGGCAAGAGCTGCAGGCTTCGGTGGATCAATTACTTGAGGCCTGATTTGAAGAGAGGTACATTTTCACTAGAGGAGGAAAGTCTTATCATTGAACTTCATGCAGTGCTAGGGAACAGATGGTCTCAAATTGCGGCACAATTGCCTGGGAGGACTGACAATGAAATAAAGAATCTGTGGAATTCTTGCCTAAAGAAGAAACTGAGGCAAAGAGGTATAAATCCTGTGACACATAAGCCACTGTCAGAGGTTGAGAATGGCGAGGAGGACAAAACAAGGAGCCAAGAATTATCCAATGAATTGAACCTTTTAAATTCTGAGAGCTTCAAGTCAGATGAAGGGTCCTATGAGCAGAGAGCATCTTCGATTGCCCCCAAAGGCTATGAGATGGAAGGTTCCTGCAGCTCCAAGATTAACACCAAAAACGACACCAACTTGATAGCCAATTGTTCCAACAAAGACTTGTTCCTAGACAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTATCCTCTTCAAATGACTGATAATCTCCCAACCAATTCAAACTCTGGCCATTGGTTCAGTCCAACTGCAAGACCTTCTGATATAAACTCTGAGTTTACTTCCAATGTTATGTCCATTCTTCCACCTACAACAACCTCATTTCTCCCTAGCACTTCTTTTTGCTACAAGCCATCACTTGCCGTCCCTTCAGAAGATATTTCAGCACCTCCTTTTGCTTTGAATGGACCCAATTACTGGGAATCCAGTGCCTCGAACAACAGCAATGGCAGCAACACAAGTGATCGCAGCAGAGAGTTGACTAGTAGCAAGAACAGTGTCCTCTCTTCCTGGGGACTGACAGAAGAAGCCAAGTGGTCTGAGTACCTCCACAACCCAATGTTGATGCTGGCAGCTCCTGAATCATTGTGCAACCAAATTAGGCCAGCCACACATTTGGTACCTGATAACACTTTAGGGTCCATAATGCCTGGTTCCAAGGAGCAACTCCAGTCTCAAACTTCTCCCATCTTTTCCAAGGACATCCAGAAACTAACAGCAGCCTTTGGACATATATAA 1215 0.4502 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSLEEESLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGINPVTHKPLSEVENGEEDKTRSQELSNELNLLNSESFKSDEGSYEQRASSIAPKGYEMEGSCSSKINTKNDTNLIANCSNKDLFLDSYTTSCQPSDLMGNYPLQMTDNLPTNSNSGHWFSPTARPSDINSEFTSNVMSILPPTTTSFLPSTSFCYKPSLAVPSEDISAPPFALNGPNYWESSASNNSNGSNTSDRSRELTSSKNSVLSSWGLTEEAKWSEYLHNPMLMLAAPESLCNQIRPATHLVPDNTLGSIMPGSKEQLQSQTSPIFSKDIQKLTAAFGHI 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02511 404 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Phco2g02511 404 MobiDBLite consensus disorder prediction 130 144 - -
Phco2g02511 404 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco2g02511 404 FunFam MYB transcription factor 68 140 - -
Phco2g02511 404 MobiDBLite consensus disorder prediction 145 164 - -
Phco2g02511 404 CDD SANT 17 61 IPR001005 -
Phco2g02511 404 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco2g02511 404 MobiDBLite consensus disorder prediction 302 324 - -
Phco2g02511 404 PANTHER MYB DOMAIN PROTEIN 55 1 323 - -
Phco2g02511 404 FunFam Myb transcription factor 11 67 - -
Phco2g02511 404 SMART sant 66 114 IPR001005 -
Phco2g02511 404 SMART sant 13 63 IPR001005 -
Phco2g02511 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Phco2g02511 404 Gene3D - 11 67 - -
Phco2g02511 404 MobiDBLite consensus disorder prediction 123 164 - -
Phco2g02511 404 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco2g02511 404 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco2g02511 404 CDD SANT 69 109 IPR001005 -
Phco2g02511 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Phco2g02511 404 Gene3D - 69 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02511 Phco-Chr2 55047076 55048485 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g02511 Myb_DNA-binding 1.9e-14 CL0123