Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02509 ATGCTTCACTCCACTCGCTCGGCTATGACAAGAACCTCCTCCCATGTACCCTCCATTTATGACAATGATCTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTCGTACGAGGAGGCTCATCAGACAGATCAAGAAAGACTAACGAGGAAAGAGTATACGAAGATGTCAGCATAAAAAAAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTCCCCCTCTAAAGGAATCTTACATGAGCTCTTCGTATCAAAGCAATGCCCAAGATTCGTGCCATTCCGCCCAAACCAAGAATTCCTGCAAGCTTAACGAAGAATTTGAAAACTTATTAAGACAAGCAAAAGACTCTAAGCCCGTTGCCCCAAGCTATACTCTCTTACAGCAGTGCTCACCTTCATCTCCTCTCAAGAAACAAAGAACAGATTCAACCCAAACACCGCCACCTCCAAACACACGGAACTTGGGGTTTGATCAAAGAACAGCTAAAGTGAACTTCTCCAATTTTTCAATACCTGCGGTGTTTCTCAAATCTAGTACTTGTCAGGGAAGCAGTACAACTCAGCAGGCAAAAAATCATTCATCTCCACCACGAACGGAGGAGATTGAAGCGCCCAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTTGAAAGAAGTGCAAAACTACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCATGGAATTAACAGATACCAAGATCAACTACGTTGTGACCAAACCACAGGCTCAGAAGCAGTTAGAGCCAAGGAAAACGCTTATAATAATATTAATAACACTTTCTGTCAAGAACCGTTCCTAGCTTCTTCTCTGTGCTCTCTTGGAGCCTCCAACGACCCAAACCTTGGTATCAGGAAACATGAGGACACTGACGACTCAATATACTTAAGTGATAATGACGAAGAGCCTGAAAATATGGTAAAGCGAGATAGGGAGGGTAACAGAGTCAAGAGAAGCAGGAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCTTCAATGCTTGACGATGCCATCGACTACCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCCGCAGCGCCTCACATGAATGGACCACATTTACCACAGTTAGTGGGAGCTGGAATGGGATTCAGGCCACCGCAGCTTCCTATTCCACCACTTTCTGCTATCACAGACAACAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCCCATGCACCTTTCTTCCCCATCATTGGAAATTCTCCCACAGAACCACACTTGGCTGCCACCACCACACCCACCACCAACTTGGCACAACATCTTGCTAAAACTGCTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGACCCTCAGGAAAATGCATCAAACAGACTGCAGAATCCAGTGTCCTTTCATCCCCATGGCATTAGTACTCCACTAGCTACCCCTTTCATTTTTCCACAAAGGTAA 1632 0.4467 MLHSTRSAMTRTSSHVPSIYDNDLLELVWENGEVVVRGGSSDRSRKTNEERVYEDVSIKKTRLNPLYSLEDHLPPLKESYMSSSYQSNAQDSCHSAQTKNSCKLNEEFENLLRQAKDSKPVAPSYTLLQQCSPSSPLKKQRTDSTQTPPPPNTRNLGFDQRTAKVNFSNFSIPAVFLKSSTCQGSSTTQQAKNHSSPPRTEEIEAPKVEKSTKESQGFQKQTSLTVERSAKLPPPLDEHSEAIGHGINRYQDQLRCDQTTGSEAVRAKENAYNNINNTFCQEPFLASSLCSLGASNDPNLGIRKHEDTDDSIYLSDNDEEPENMVKRDREGNRVKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIDYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLPQLVGAGMGFRPPQLPIPPLSAITDNRLHQMFGFPNQIPTMPMPHAPFFPIIGNSPTEPHLAATTTPTTNLAQHLAKTAASLQVSLPTNLDPQENASNRLQNPVSFHPHGISTPLATPFIFPQR 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02509 543 MobiDBLite consensus disorder prediction 128 158 - -
Phco2g02509 543 MobiDBLite consensus disorder prediction 311 347 - -
Phco2g02509 543 CDD bHLH_AtPIF_like 338 400 IPR047265 -
Phco2g02509 543 PANTHER TRANSCRIPTION FACTOR PIF3 3 504 IPR044273 GO:0003700|GO:0006355
Phco2g02509 543 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
Phco2g02509 543 MobiDBLite consensus disorder prediction 319 347 - -
Phco2g02509 543 FunFam Basic helix-loop-helix transcription factor 333 396 - -
Phco2g02509 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 402 IPR036638 GO:0046983
Phco2g02509 543 MobiDBLite consensus disorder prediction 197 214 - -
Phco2g02509 543 Gene3D - 334 395 IPR036638 GO:0046983
Phco2g02509 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Phco2g02509 543 MobiDBLite consensus disorder prediction 183 241 - -
Phco2g02509 543 SMART finulus 344 393 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02509 Phco-Chr2 55016533 55018920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco2g02509 HLH 5e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02509 2 55016533 55018920 Phco6g01371 6 13832541 13833976 PCT