Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02489 ATGCAGTATTACTCTTTTGATGCAATTAAATTTTATCTGAATTTTGTCCCTATTGGTTGTAATTTGAAAGGTCAAAAGCTTGGACCGCTTTATCCTACGCCCTCCGCCCTGATTATCCTGCGCATATTTAGCGGCTTTCTGCCGAGATCATCCTCCTCCGCGGCGCTATCACTTTCTCAAAGACACAATATCCTGTTGGATTCCAGTTGTAATTTTACTCTGATTGATGGAAAATTCCTTCCTAGTGGTTTACCAATTAGGAGTGACACTGATTTTTCAGAAAGAATCATGAGTTGTTTCAGCTGTTGCGAAGAAGATGACTTCCAGAAGCATGCCGAAAGTGGAGGACAACATCTTGTAAAAAACTCAACAGGAAATGATGGAAATGGTCGTGCATCTGAAACTGCAAAGCAGGGCATTCAAGCTGTTAAAATTCAGCCCATTGAAGTTCCTGAATTACAAGTAGATGAACTCAAAGAAATTACTGATGGTTTTGGAGAAAGTTCTTTGATTGGAGAGGGATCCTATGGAAGAGTGTATTACGGTGTTCTGAAAAGTGAGCAGGCTGCAGCAATCAAGAAATTAGATGCCAGTAAGCAGCCCGATGACGAGTTTTTAGCCCAGGTTTCCATGGTTTCACGGCTGAAACATGACAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGAAACTCCCGAATTCTTGCTTACGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTGCACGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTCTAACATGGACTCAAAGAGTTAAAATTGCTGTAGGGGCAGCCAAAGGACTTGAGTATTTGCATGAGAGGGCTGATCCTCACATTATCCATCGGGACATCAAGTCAAGCAACGTACTCATCTTTGATGATGATGTTGCTAAAATTGCAGATTTTGATTTGTCGAATCAGGCTCCTGACATGGCAGCACGACTCCATTCCACCCGTGTCCTTGGAACCTTTGGTTATCATGCACCTGAATATGCAATGACTGGTCAATTGAATGCTAAGAGTGATGTATACAGTTTCGGTGTCGTTCTTCTGGAACTTTTGACGGGAAGGAAGCCTGTTGATCATACACTACCACGTGGACAACAGAGCCTGGTTACTTGGGCTACTCCAAGACTCAGTGAGGATAAAGTCAGACAGTGTGTAGATGCAAGACTAGGGGGAGATTACCCTCCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCCCTGTGTGTACAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTCCAACCTTTGTTGAATGCAAGACATGGACCTGCTGGTGAAACTTCAAACTAA 1374 0.4287 MQYYSFDAIKFYLNFVPIGCNLKGQKLGPLYPTPSALIILRIFSGFLPRSSSSAALSLSQRHNILLDSSCNFTLIDGKFLPSGLPIRSDTDFSERIMSCFSCCEEDDFQKHAESGGQHLVKNSTGNDGNGRASETAKQGIQAVKIQPIEVPELQVDELKEITDGFGESSLIGEGSYGRVYYGVLKSEQAAAIKKLDASKQPDDEFLAQVSMVSRLKHDNFVQLLGYCIDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWTQRVKIAVGAAKGLEYLHERADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLNARHGPAGETSN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02489 457 ProSitePatterns Protein kinases ATP-binding region signature. 171 194 IPR017441 GO:0005524
Phco2g02489 457 SMART serkin_6 165 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02489 457 Gene3D Phosphorylase Kinase; domain 1 126 239 - -
Phco2g02489 457 MobiDBLite consensus disorder prediction 117 136 - -
Phco2g02489 457 Pfam Protein tyrosine and serine/threonine kinase 170 441 IPR001245 GO:0004672|GO:0006468
Phco2g02489 457 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 100 448 - -
Phco2g02489 457 FunFam PTI1-like tyrosine-protein kinase 3 129 239 - -
Phco2g02489 457 ProSiteProfiles Protein kinase domain profile. 165 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02489 457 FunFam pto-interacting protein 1 241 452 - -
Phco2g02489 457 CDD STKc_IRAK 171 444 - -
Phco2g02489 457 Gene3D Transferase(Phosphotransferase) domain 1 240 452 - -
Phco2g02489 457 SUPERFAMILY Protein kinase-like (PK-like) 145 441 IPR011009 -
Phco2g02489 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02489 Phco-Chr2 54870672 54877341 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Phco2g02489 PK_Tyr_Ser-Thr 7.2e-46 CL0016