Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02467 ATGGAGAGGAGTTTATCAGAAAATGGGTCGTCAGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACGAAAGGTCCATGGACAGAGGAAGAGGATTCAGTTCTCTCCGATTACATCACACTCCACGGAGAAGGTCACTGGAACTCTGTCGCTCGCTACACAGGTCTAAAACGAACGGGCAAAAGCTGCAGACTACGATGGTTGAACTACTTGCGCCCTAACGTTCGACGTGGGAACATAACCCTCCAAGAACAGCTCATGATTCTCGACCTCCATTCCCGATGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTGCCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGATGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGCATGCTTGAGCGGATTCAGGCTCAGGCTTCATCATCAGGCCAAGCCCAAACCACCTTAATCTCCAAGGTTCAAGCCCAAAGCGACCCTTGTGGAGGAGCCACCGCCACCGCCACTGCCAGTAACCCGGGTTTGCTGTCAGAGGCTTCATCGGCGGTTGATGTCCACGAGCCGTCTCTCTCTGATTCCGGCGCGTCTTACTGTTTAATGGGTTGTGGAAGTTGGTCATCATATGGTGCAGAAGAAGGTTATAGCCGGCTATGGGAAGAGAAAAAGGAGGGGTACTCGGAGATAGCAGGGAGTGGTTTTGGCGGTGTTGACTTGTGGACGGACGAGAACATTTGGTTCTTGCAACAGCAGCTCGCTGATGATTTCTGA 825 0.5055 MERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSVLSDYITLHGEGHWNSVARYTGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQAQTTLISKVQAQSDPCGGATATATASNPGLLSEASSAVDVHEPSLSDSGASYCLMGCGSWSSYGAEEGYSRLWEEKKEGYSEIAGSGFGGVDLWTDENIWFLQQQLADDF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02467 274 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 186 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco2g02467 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 76 IPR017930 -
Phco2g02467 274 ProSiteProfiles Myb-like domain profile. 20 72 IPR001005 -
Phco2g02467 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Phco2g02467 274 SMART sant 77 125 IPR001005 -
Phco2g02467 274 SMART sant 24 74 IPR001005 -
Phco2g02467 274 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Phco2g02467 274 MobiDBLite consensus disorder prediction 1 27 - -
Phco2g02467 274 CDD SANT 27 72 IPR001005 -
Phco2g02467 274 FunFam Myb transcription factor 25 77 - -
Phco2g02467 274 Gene3D - 24 77 - -
Phco2g02467 274 FunFam MYB transcription factor 82 145 - -
Phco2g02467 274 SUPERFAMILY Homeodomain-like 22 119 IPR009057 -
Phco2g02467 274 CDD SANT 82 121 IPR001005 -
Phco2g02467 274 MobiDBLite consensus disorder prediction 1 23 - -
Phco2g02467 274 Gene3D - 82 123 - -
Phco2g02467 274 Pfam Myb-like DNA-binding domain 78 121 IPR001005 -
Phco2g02467 274 Pfam Myb-like DNA-binding domain 25 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02467 Phco-Chr2 54712523 54713551 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g02467 Myb_DNA-binding 3.1e-15 CL0123