Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02458 ATGGATAATAATAAGGAGACGACGATGATGATGATGATGGGTGTGAAGAAGGAGGATCATGCCATAGGGTCTTCGTCCTTCCATTGCAATTATCCATTCCTTGATTTCTCTGAGGAAAAGGGCTCTTTAGGGTTTATGGAGTTGTTGGGTGTGCAAGAATATAGTCCTCTGCTTGATTTGCCTTTAGGGTCCAACATGGCAGTGCCTCAAACCTCCGATCTTAAGGAACCACCTCAGACTAAGAAGGATTGGTCCGAGGTAACCAACCAGCAACCTGCGACTCCGAACTCTTCATCCATTTCCTCCTTGTCCAGTGAGGCTCTCAACGATGAACAACAGAATAGAACTGTAGACCAAACACATGATGAACACCAAAAGACAAAGGAACAGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTGGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCGTGCAATGTGAAGAAACGCGTGGAGCGATCTTTTACCGACCCAAGCATTGTGGTGACCACCTACGAAGGCCAACACACTCATCCAAGCCCAGTTTTGGGTCGCTCTAACAACCTTGGTTCGCTAATGTCTGGATCTGAGAACTACATGTCCCAATATTATCAGCAGCACCATCAACAACAACTCCATGTCGATGCATTGTCTTCTTTGGGTTTCCTCTCTCCAAAGAATGTCACTTTTCCTCAAGAGACTGCGTTGTTGAGTGACTATGGGCGTCTTCAAGATGCTGTTCCTTCACATATGTTTAAACAAGACTAG 876 0.4566 MDNNKETTMMMMMGVKKEDHAIGSSSFHCNYPFLDFSEEKGSLGFMELLGVQEYSPLLDLPLGSNMAVPQTSDLKEPPQTKKDWSEVTNQQPATPNSSSISSLSSEALNDEQQNRTVDQTHDEHQKTKEQLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPVLGRSNNLGSLMSGSENYMSQYYQQHHQQQLHVDALSSLGFLSPKNVTFPQETALLSDYGRLQDAVPSHMFKQD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02458 291 MobiDBLite consensus disorder prediction 115 142 - -
Phco2g02458 291 MobiDBLite consensus disorder prediction 83 114 - -
Phco2g02458 291 Coils Coil 117 141 - -
Phco2g02458 291 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g02458 291 FunFam WRKY transcription factor 57 143 217 - -
Phco2g02458 291 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g02458 291 SMART WRKY_cls 157 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g02458 291 MobiDBLite consensus disorder prediction 68 142 - -
Phco2g02458 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 245 IPR044810 GO:0003700
Phco2g02458 291 SUPERFAMILY WRKY DNA-binding domain 149 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco2g02458 291 PIRSF WRKY_txn_fact_IIc 1 291 IPR017396 GO:0003700
Phco2g02458 291 Gene3D WRKY domain 142 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02458 Phco-Chr2 54657972 54659299 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco2g02458 WRKY 1.9e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02458 2 54657972 54659299 Phco2g02458 2 54657972 54659299 ECH
Phco2g02458 2 54657972 54659299 Phco6g01444 6 14813090 14814766 PCT