Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02453 ATGTCAATCGGTATATTAAAAAAGTTTCAAGGCTTGCTGCTGAAATGGATGCTTATATTATCTTGCCTGGCATTTGTGATTGTGGTTGGTGAAAACGATAAAACAATGGAGCCCCCTTCTTTATATGATTCTAGATCACCTTTGGCCTTTGTTGTTGTTCATGATCTACCTCTACCAGCAAGTCTCCATTTGTCAAAGCGTGAGCTTTCTCAAGCTGCACCAATTGAAGCACTGTCACCAGTCAGTCCTCCTTCGTATGGTCCCTTCTCAAGTAATGGCCAATCCCCTACAAGTTCACATTTATCCATACCATTCAGAAAGAAGAGTGAAATGAAACCTCCAATTTCTGGCTTTAAATATATTGCTCCTGTGCATTCGCCTGCAGCTGCAGGCCCTTCTGCTTCAACTCAGCCACCATTGTCTCCTTATGCTTCCAATTGTTGTAAACAAGACATGGTGCTGAAAAGAGCCAGTAAGAGTTGCCACTGTGCATATCCCATAAAGCTAGACCTTTTTCTTTCGAATGTCTCTCAAAATCCTAGTTGGAATGATTTTCTTAATGAATTAGCTGTCCAGCTTGGGTTGCGAAATACCCAGATTGAACTGATAAACTTTTATGTACTCGGTGTATCAACATTAAATATATCAATGAATATTACTCCACATAAAGGCATCAGTTTCTCTGCCAGTGAAGTTTCTAAAATAAACTCTTCGCTTTCAATGCATAAGGTTAAACTAGACCCTCGATTAGTGGGTGGATACCAACTTCTCAATATAACTTGGTTTGAACCACCAGCGCCTTCACAAGCTCCTACGTTAGCTGCATCACCTGTGAAAACACCTTTGTATCATTCACCCACTGCTACATCATCATCATCCAGTTCTTCAGGAAGGCATTCAAATCTGTTTATTATTCTTGGAATTGCTATTGGCATAATCTTTATTGGTATCATATCTGTACTTATATTCTGTTTATGTACATTCCTGCCAAAAGCAAACGCACCTCCCGTAGAAACTGAAAAGCCAAGGACAGAGAGTACAGTTTCAGCTGTGGGTTCTCTTCCTCACCCAAGTAGTACACGATTTATTGCTTATGAAGAGCTTAAAGAAGCAACAAACAACTTTGAAACAGCGAGCGTACTTGGAGAAGGAGGGTTTGGTAGAGTTTTTCAAGGTGTCTTGAATGATGGTACTCCCGTTGCAATTAAGAGGCTTACAAATGGAGGGCAACAGGGTGACAAGGAGTTTTTGGTGGAAGTTGAGATGCTTAGCCGGTTGCATCATCGTAACCTTGTAAAACTAGTGGGATACTTCAGTAATCGTGACTCGTCACAAAATTTACTTTGCTATGAGCTTGTTCCTAATGGAAGTTTGGAGGCTTGGCTTCATGGTCCCTTGGGAATTAATTGTCCTTTGGATTGGGACACCAGAATGAAAATTGCGCTTGATGCTGCAAGGGGACTTTCATACTTGCACGAAGACTCGCAGCCCTGTGTAATACATAGAGACTTCAAGGCATCCAACATATTGCTGGAGAACAACTTTCATGCTAAGGTTGCAGATTTTGGTCTTGCTAAGCAAGCACCTGAAGGCAGATCCAATTATTTGTCTACTCGTGTCATGGGGACATTTGGGTACGTAGCTCCTGAATATGCCATGACTGGACACCTACTTGTTAAAAGTGATGTTTATAGCTATGGTGTTGTCTTACTGGAACTGCTTACTGGTAGGAAGCCTGTGGATATGTCACAGCCATCTGGGCAAGAGAACCTTGTTACTTGGGCTAGGCCAATCCTTCGAGATAAGGACAGGTTGGAAGAGATTGTTGATCCAAGCCTCGGCGGAAAGTATCCTAAGGAAGATTTTCTACGTGTTTGCACTATTGCTGCAGCCTGTGTTGCTCCCGAAGCAAACCAGCGACCCACAATGGGTGAAGTGGTGCAGTCACTTAAAATGGTGCAGCGCATCACAGAATACCATGATTCTGTAATGGCTTCATCCAATACTCGAGCCAACCTGAGACAGTCCTCTAGCACTTTTGAATTTGATGGAACATCTTCTGTATTCTCTTCGGGTCCTTACTCTGGTCTAAGTGCCTTTGAAAACGACAACATTTCTAGGACTGTGGTTTTCTCTGAAGATCTTTGTGAAGGACGATGA 2160 0.4236 MSIGILKKFQGLLLKWMLILSCLAFVIVVGENDKTMEPPSLYDSRSPLAFVVVHDLPLPASLHLSKRELSQAAPIEALSPVSPPSYGPFSSNGQSPTSSHLSIPFRKKSEMKPPISGFKYIAPVHSPAAAGPSASTQPPLSPYASNCCKQDMVLKRASKSCHCAYPIKLDLFLSNVSQNPSWNDFLNELAVQLGLRNTQIELINFYVLGVSTLNISMNITPHKGISFSASEVSKINSSLSMHKVKLDPRLVGGYQLLNITWFEPPAPSQAPTLAASPVKTPLYHSPTATSSSSSSSGRHSNLFIILGIAIGIIFIGIISVLIFCLCTFLPKANAPPVETEKPRTESTVSAVGSLPHPSSTRFIAYEELKEATNNFETASVLGEGGFGRVFQGVLNDGTPVAIKRLTNGGQQGDKEFLVEVEMLSRLHHRNLVKLVGYFSNRDSSQNLLCYELVPNGSLEAWLHGPLGINCPLDWDTRMKIALDAARGLSYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRSNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEEIVDPSLGGKYPKEDFLRVCTIAAACVAPEANQRPTMGEVVQSLKMVQRITEYHDSVMASSNTRANLRQSSSTFEFDGTSSVFSSGPYSGLSAFENDNISRTVVFSEDLCEGR 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02453 719 CDD STKc_IRAK 381 651 - -
Phco2g02453 719 ProSitePatterns Protein kinases ATP-binding region signature. 381 403 IPR017441 GO:0005524
Phco2g02453 719 FunFam Receptor-like serine/threonine-protein kinase ALE2 355 452 - -
Phco2g02453 719 Gene3D Phosphorylase Kinase; domain 1 357 452 - -
Phco2g02453 719 Pfam Protein kinase domain 376 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02453 719 PANTHER OS01G0750732 PROTEIN 144 670 - -
Phco2g02453 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672|GO:0006468
Phco2g02453 719 SUPERFAMILY Protein kinase-like (PK-like) 350 652 IPR011009 -
Phco2g02453 719 Gene3D Transferase(Phosphotransferase) domain 1 453 675 - -
Phco2g02453 719 FunFam Receptor-like serine/threonine-protein kinase ALE2 453 670 - -
Phco2g02453 719 ProSiteProfiles Protein kinase domain profile. 375 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02453 Phco-Chr2 54582409 54587975 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Phco2g02453 Pkinase 8.4e-45 CL0016