Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02441 ATGGCATCGATTCAACGTTCGGCGACAAGTTCTGGATCTGAAGCAGGAGATCTGCAAATCGACGAGAGAAAGCGGAAGAGGATGTTGTCGAACCGCGAATCCGCGCGGCGATCGCGGATGAGGAAGCAGAAACAGCTGGAGGATTTGACCGATGAAGTTAGCAGATTGCAAGGCGCGAACAAGAAGCTTGTGGAGAACATAACGGCCAAGGAAGAAGCGTGCGCTGAGACCGAAGCCGCGAACAGTATTTTGAGGGTTCAGACCATGGAACTGACGGAACGATTACGCTTCTTGAACTCTATCCTTGAAATCGCTGAAGAGGTCGGAGGTTTATCCGTTGAGATTCCCGATATTCCAGATCCTCTCCTCAAGCCATGGCAGATTCCTCATCCGACGCAAGCGATTATGGCCACCGCAAATATGTTTCTGCGTTGA 435 0.5103 MASIQRSATSSGSEAGDLQIDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVSRLQGANKKLVENITAKEEACAETEAANSILRVQTMELTERLRFLNSILEIAEEVGGLSVEIPDIPDPLLKPWQIPHPTQAIMATANMFLR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02441 144 SUPERFAMILY Leucine zipper domain 23 71 IPR046347 GO:0003700|GO:0006355
Phco2g02441 144 MobiDBLite consensus disorder prediction 1 52 - -
Phco2g02441 144 FunFam BZIP transcription factor 21 72 - -
Phco2g02441 144 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Phco2g02441 144 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 128 - -
Phco2g02441 144 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 67 IPR004827 GO:0003700|GO:0006355
Phco2g02441 144 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Phco2g02441 144 Coils Coil 32 80 - -
Phco2g02441 144 MobiDBLite consensus disorder prediction 17 52 - -
Phco2g02441 144 Pfam bZIP transcription factor 23 76 IPR004827 GO:0003700|GO:0006355
Phco2g02441 144 CDD bZIP_plant_GBF1 24 68 IPR045314 GO:0003700|GO:0006355
Phco2g02441 144 MobiDBLite consensus disorder prediction 1 16 - -
Phco2g02441 144 Gene3D - 21 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02441 Phco-Chr2 54503809 54504243 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g02441 bZIP_1 9.4e-12 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02441 2 54503809 54504243 Phco2g02441 2 54503809 54504243 ECH
Phco2g02441 2 54503809 54504243 Phco6g01463 6 15158330 15158988 PCT