Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02427 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGATTGAAGAAGGGGAGGTGGACAACCGAGGAGGATGAAATTCTGACCAAGTACATTCAAGCTAATGGAGAAGGTTCATGGAGGTCCTTGCCAAAAAATGCAGGATTGTTAAGATGTGGGAAGAGTTGCAGGTTAAGGTGGATTAACTATTTAAGAGCTGATCTAAAGAGAGGGGACATTTCTGTGGAGGAAGAAAACACCATTGTGAAGTTGCATGCTTCGCTTGGCAACAGGTGGTCGTTGATAGCGAGTCACTTGCCTGGAAGAACTGACAATGAGATTAAAAATTATTGGAACTCTCATTTAAGTCGGAAAATTTACACTTTTCGAGGTACAACTAATGCTAAATCAGATATTATCACGCTTACCCTACCTCCTAAGAGGAAACGTGGCAGGACCAGTCGCTGGGCCATGAAGAAGAACCAGACATATTGTGTCCTAAAACAAAACCAACCCTTATTACCAGCCGTTCTTCTCCCACCCACACCGCCACTTGAGACAGAGAAACATTCCTCCACCAATGAAAATACTGCTACTCAAGAAGAAGAAGAAAATGTAGGTAATATTGGCATGTGGGTAGAAGGTGAGAAAAAAATAATAATAGATGAGGATGACATATGGGCACCCTATGACAAGGAAGTTACTGATGGGGGAGAGAGGTTGCAGTGTTTTTGTTCAACCAAGACTTCTGATTCTGACTTAAACCAAAGCGGGGTGCTGCTGGATCATAAGGATGAGTCTGTGTCATGGGAGCAGTACCAGAGCCTTCTCACTTGGCTTTGCCAAGATGAAGACTGGGAGAAGGATTTGCAGAGCGTTGGTGAGATTGATCCTCAGAAACAAAAAGACATGGTTGATTGGTTTCTCTCTTGA 903 0.4363 MGRAPCCEKVGLKKGRWTTEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGDISVEEENTIVKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYTFRGTTNAKSDIITLTLPPKRKRGRTSRWAMKKNQTYCVLKQNQPLLPAVLLPPTPPLETEKHSSTNENTATQEEEENVGNIGMWVEGEKKIIIDEDDIWAPYDKEVTDGGERLQCFCSTKTSDSDLNQSGVLLDHKDESVSWEQYQSLLTWLCQDEDWEKDLQSVGEIDPQKQKDMVDWFLS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02427 300 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco2g02427 300 CDD SANT 16 61 IPR001005 -
Phco2g02427 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco2g02427 300 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 220 - -
Phco2g02427 300 MobiDBLite consensus disorder prediction 176 194 - -
Phco2g02427 300 Gene3D - 71 116 - -
Phco2g02427 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco2g02427 300 SMART sant 13 63 IPR001005 -
Phco2g02427 300 SMART sant 66 114 IPR001005 -
Phco2g02427 300 FunFam Myb transcription factor 11 67 - -
Phco2g02427 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco2g02427 300 MobiDBLite consensus disorder prediction 171 194 - -
Phco2g02427 300 FunFam Myb transcription factor 71 116 - -
Phco2g02427 300 CDD SANT 71 112 IPR001005 -
Phco2g02427 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco2g02427 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco2g02427 300 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Phco2g02427 300 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02427 Phco-Chr2 54390440 54394395 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g02427 Myb_DNA-binding 1.4e-12 CL0123