Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02389 ATGATTATTAAGCGGAACATGAAAACTGCAATTCCAAAGCAGAAATGGTTCAAGTCAGAAAAACTAGGGAATTCGGAGATTCAGCAGAAGTCGAGATTAAATGGGGTTTATTCTGCTGAAGGAGTCTCTGGATCCAGTGAAGCACCGTCCAATTCAAATTCAGTGGATTTCAATGGCACAATTAGGGACTTGCCCCAATCAGAAGAAGGGGTTTGTGCCATTCAACTCCAGTCTTCCAGGGGTCGCGCCAAGAAACTTCCTCGCAGGTTCAATGATTCTGTTCTTTACAACCGGTTAGGGTCTGTAAACGAGATTAGGAATTCTTTACAAGACGTTGCTGTCATGGGTAGTGAGCTAGATTCTCCTTGTTTTCCATGTTCTGTCGAGCTAAGAGATTCCGAGTACTCAGTTAAGATGGTTAAAAAGACAGTTAATGGGGGTCGTTCTTTGTTGGTTAAAGAAAAGAGTAATGGTGTGTCTGGACTAAGTTCCGCTGCTGAATGTGTGAATGGAAGTGGCAAAAGGAAGAGAGATGTTTGCAGATTGGAGGATTTTTGCGTGGGTGATATAGTTTGGGCAAAATGTGGGAAGACCCATCCCGCATGGCCTGCTGTAGTCATTGATCCTTTCCTTCGAGCTCCCAAATCCGTCATAAGCTGTTGCGTCCCTTCTTCACTTTGTGTTATGTTTTTTGGTTACTCAAAAAATGGGAAGAGAAGGGACTATGCCTGGGTGAAGCAGGGGATGATATTCTCCTTCTGGGAATTCATGGACAGATTTCAGGGGCAGATCAAGTTGTACAAAAGTAAAGCAAGTGACTTTCACAAGGCAATGGAGGAGGCAATGTTGGCAGAAGATGGCATTTTGGACTTACACTTGGAAGCTGAGCAAAATATGGTGGGTGTGGATTCCCAGGTTGACCACCGTTTTTCCTATCAAGACCAGGGTACGCTGTCTTGTGCTGGCTGTGGTTTGATGTTGCCATACAAAACCATGAAGAAGATTAAGGATTCAAGTTGTGCTCCTCAGCACTATTGCAAGTCCTGTGCAAAGTTAATAAAATCGAAACAATATTGTGGCATTTGCAAAATGATTTGGCACCATTCAGATGGGGGAAATTGGGTATGTTGTGATGGTTGTAACGTCTGGGTGCATGCTGAGTGTGACAAAATTTCCAGTAAACTTTTCAAGGATCTGGAAAATATGGATTATTATTGCCCCGATTGCAAGGGAAAATTCAATTGTAAATTATCAACATCACATGGACACAAGTCAAAAAAGATATCAATGGAGAATAGTCAAAAACTTGTATTACGTGAAAATCTTGCGGTGATATGCAATGGCATGGAAGGAATTTATATTCCAAAGCTTCATTTGGTTATGTGCAATTGCGGCTTCTGTGGTTCAAAGAAACATACACTTACTGAATGGGAAAGACATGCAGGTTGCAAAGCCAAAAAATGGAAACATAGCGTGAAAGTAGAAAGCACAATGCAACCGCTAATAAAATGGATCACTGAACACAATGCCTCAGCTGGAGTTCCCCCGCAGTTAGATCAGCAGCAAATTCTCTCCTTTTTGCAAGAGAAGTACGAGCCAGTTTATGCAAAATGGACAACAGAAAGGTGTGCCGTTTGCAGATGGGTGGAAGATTGGGAATATAACAAAATTATCATCTGTAACAGGTGCCAAATGGCTGTCCACCAAGAATGCTATGGGGTAAAGAATGTTCAGGACTTTACTTCCTGGGTTTGTAGAGTTTGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGTGGGGCACTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTCACATGCGCTTGGTTTCAGCCTGAAGTTCTTTTCCAAAATCATGAGGCAATGGAACCGGCCACTGGAATCCTTAAGATTCCTCGTAATTCCTTTTCGAAGACTTGCGTGATCTGTAAACAAAGCCACGGTTCCTGTATAAGTTGTTGCAAATGTGCTACACATTTTCATGTGACATGCGCGTCAAGAATGGGATATATCATGGAATTGCATTCGACAGAAAAGAATGGGACTACAACAACGAAGACGCTGATATACTGTGCAATTCACAGGCTCCCAAACCCAGATTCGGGACTGGTTGTACATACACCCATGGAGGTATTCTCACCGACAATTTCGCTTCATAATCACCCGAGGTGCTTCAGGGGATCAAGTCTGGCTTCAACAAAGAATATAGAACTTCTTGAACCTTCAAACTCAAAAATTAATGAGATTGATCCACTATCTGCTGCCCGCACTCGGGTGTACGAAAGGTCTTCCAATAAGAAGACTGTTGCGCCTACAATTCACTTGCTTGGGGGGCCAAAGATTCACTCTTTAACTGAAGTAACTCTATTGAATGGCATTAAGGATGCTCAACCTCGTGAATTTTCTTCTCTTAAGGAACGTCTTCATCATTTACGGAAGACAGAAAACGAAAGAGTTTGCTTAGGAAAATCAGGAATTCATGGATGGGGCCTCTTTGCTCGTAGAGATTTACAAGAAGGAGAAATGGTTGTTGAATATCGTGGTGAGCAGGTACGGCGTAGTATTGCAGACCTAAGGGAAGCAAAGTATCGTTCAGAAGGCAAAGATTGTTATTTGTTCAAGATTAGTGATGAAGTGATGATTGACGCAACGGATAAGGGCAATATTGCACGTATAATAAACCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGAGTGGTGAGGAGAATCGGATTGTGCTTATTGCGAAGACCATTGTTACAGCTGGTGAAGAACTAACGTATAATTACTTGTTTGATGTAGATGAGCCGGATGAACTGAAGGTACCCTGTCTCTGTAAAGCCCCTAATTGTAGGGAATTTATGAACTAG 2922 0.4244 MIIKRNMKTAIPKQKWFKSEKLGNSEIQQKSRLNGVYSAEGVSGSSEAPSNSNSVDFNGTIRDLPQSEEGVCAIQLQSSRGRAKKLPRRFNDSVLYNRLGSVNEIRNSLQDVAVMGSELDSPCFPCSVELRDSEYSVKMVKKTVNGGRSLLVKEKSNGVSGLSSAAECVNGSGKRKRDVCRLEDFCVGDIVWAKCGKTHPAWPAVVIDPFLRAPKSVISCCVPSSLCVMFFGYSKNGKRRDYAWVKQGMIFSFWEFMDRFQGQIKLYKSKASDFHKAMEEAMLAEDGILDLHLEAEQNMVGVDSQVDHRFSYQDQGTLSCAGCGLMLPYKTMKKIKDSSCAPQHYCKSCAKLIKSKQYCGICKMIWHHSDGGNWVCCDGCNVWVHAECDKISSKLFKDLENMDYYCPDCKGKFNCKLSTSHGHKSKKISMENSQKLVLRENLAVICNGMEGIYIPKLHLVMCNCGFCGSKKHTLTEWERHAGCKAKKWKHSVKVESTMQPLIKWITEHNASAGVPPQLDQQQILSFLQEKYEPVYAKWTTERCAVCRWVEDWEYNKIIICNRCQMAVHQECYGVKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQPEVLFQNHEAMEPATGILKIPRNSFSKTCVICKQSHGSCISCCKCATHFHVTCASRMGYIMELHSTEKNGTTTTKTLIYCAIHRLPNPDSGLVVHTPMEVFSPTISLHNHPRCFRGSSLASTKNIELLEPSNSKINEIDPLSAARTRVYERSSNKKTVAPTIHLLGGPKIHSLTEVTLLNGIKDAQPREFSSLKERLHHLRKTENERVCLGKSGIHGWGLFARRDLQEGEMVVEYRGEQVRRSIADLREAKYRSEGKDCYLFKISDEVMIDATDKGNIARIINHSCMPNCFARIMCLSGEENRIVLIAKTIVTAGEELTYNYLFDVDEPDELKVPCLCKAPNCREFMN 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02389 973 PANTHER PHD FINGER PROTEINS 34 388 - -
Phco2g02389 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 415 IPR013083 -
Phco2g02389 973 SUPERFAMILY FYVE/PHD zinc finger 356 417 IPR011011 -
Phco2g02389 973 FunFam Histone-lysine N-methyltransferase 592 711 - -
Phco2g02389 973 ProSiteProfiles SET domain profile. 831 948 IPR001214 GO:0005515
Phco2g02389 973 CDD PWWP_AtATX3-like 188 287 - -
Phco2g02389 973 Pfam PHD-zinc-finger like domain 596 708 - -
Phco2g02389 973 SMART PHD_3 358 410 IPR001965 -
Phco2g02389 973 SMART PHD_3 653 709 IPR001965 -
Phco2g02389 973 SMART PHD_3 542 589 IPR001965 -
Phco2g02389 973 Pfam PHD-finger 358 411 IPR019787 -
Phco2g02389 973 Pfam SET domain 842 947 IPR001214 GO:0005515
Phco2g02389 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 710 IPR013083 -
Phco2g02389 973 SMART set_7 831 954 IPR001214 GO:0005515
Phco2g02389 973 ProSiteProfiles Post-SET domain profile. 957 973 IPR003616 -
Phco2g02389 973 ProSiteProfiles Zinc finger PHD-type profile. 540 591 IPR019787 -
Phco2g02389 973 CDD PHD_TCF19_like 359 409 - -
Phco2g02389 973 SMART PostSET_3 957 973 IPR003616 -
Phco2g02389 973 ProSitePatterns Zinc finger PHD-type signature. 543 588 IPR019786 -
Phco2g02389 973 Gene3D - 179 289 - -
Phco2g02389 973 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 7 973 IPR025780 -
Phco2g02389 973 ProSiteProfiles Extended PHD (ePHD) domain profile. 594 709 IPR034732 -
Phco2g02389 973 Pfam PHD-finger 555 589 - -
Phco2g02389 973 SUPERFAMILY FYVE/PHD zinc finger 541 605 IPR011011 -
Phco2g02389 973 SUPERFAMILY SET domain 829 969 IPR046341 -
Phco2g02389 973 FunFam Histone-lysine N-methyltransferase 807 973 - -
Phco2g02389 973 Pfam PWWP domain 188 284 IPR000313 -
Phco2g02389 973 SUPERFAMILY Tudor/PWWP/MBT 184 286 - -
Phco2g02389 973 Gene3D SET domain 814 973 IPR046341 -
Phco2g02389 973 ProSiteProfiles PWWP domain profile. 187 256 IPR000313 -
Phco2g02389 973 ProSiteProfiles Zinc finger PHD-type profile. 356 412 IPR019787 -
Phco2g02389 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 537 591 IPR013083 -
Phco2g02389 973 CDD SET_SETD1-like 820 969 - -
Phco2g02389 973 CDD PHD_ATX3_4_5_like 542 588 IPR042011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02389 Phco-Chr2 54145319 54153644 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco2g02389 zf-HC5HC2H_2 1.3e-28 CL0390