Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g02388 | ATGGAGCCAGACATTGAATCCAAGTACGCTCATAACGGTAAGGTTATGGTGGGCACTGCCGTTCTCCTCTTCATTCTCGTAATCCTCATCATTCTGTTCAACACCTACGTCCGTTTCTGCCGCCGTCGCCGCCGCGCTCTCTTGTCCCATTCCCTTCCGACCACTTCCTCCGCCGAGCCCTGTCTCGATCCTTCCGTCATCAAGTCCCTCCCCACTTTCTCCTTCTCCGCCGCCGTCCACCGCTCTCACCAGGACTGCGCCGTCTGCCTGTCGGAGTTCGCCGACGGCGATAAAGTCCGCGCGCTCCCAAACTGTAACCACGGTTTCCACGCCGACTGCATCGACGCCTGGTTCGCCTCTCACTCCACGTGTCCTCTCTGCCGAACCCCGGTCCAACCAGCCACGGCTTGCACTGACGCTGAACCCGGTTCGGTTCCGGTTTCCGAAGCGGACGAGGGTTGTTCTTCGTCTTTGGGTCCCCCAATTGCGTGTCCGAGAAAGACGTTGGATATAGTGATAGAGGTGGGTGATGTGGAAAGAGGGTTGGCTCCTGTAACCGAAGATGACGGATTCAGATGCTCATTGAAGAGGTTTTGTAATGTTTAA | 606 | 0.5677 | MEPDIESKYAHNGKVMVGTAVLLFILVILIILFNTYVRFCRRRRRALLSHSLPTTSSAEPCLDPSVIKSLPTFSFSAAVHRSHQDCAVCLSEFADGDKVRALPNCNHGFHADCIDAWFASHSTCPLCRTPVQPATACTDAEPGSVPVSEADEGCSSSLGPPIACPRKTLDIVIEVGDVERGLAPVTEDDGFRCSLKRFCNV | 201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g02388 | 201 | SUPERFAMILY | RING/U-box | 66 | 135 | - | - | |
| Phco2g02388 | 201 | CDD | RING-H2_EL5-like | 85 | 128 | - | - | |
| Phco2g02388 | 201 | FunFam | E3 ubiquitin-protein ligase ATL6 | 51 | 134 | - | - | |
| Phco2g02388 | 201 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 136 | IPR013083 | - | |
| Phco2g02388 | 201 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 128 | IPR001841 | - | |
| Phco2g02388 | 201 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 17 | 144 | - | - | |
| Phco2g02388 | 201 | SMART | ring_2 | 86 | 127 | IPR001841 | - | |
| Phco2g02388 | 201 | Pfam | Ring finger domain | 85 | 128 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g02388 | Phco-Chr2 | 54139440 | 54140045 | Transposed |