Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02375 ATGACACAACTTTTCTCATCCTATTTCCCTCTCCTGTCTCGAACACTAAAATCAAAAACCCTAACCTCTCAACCTTTCACCGCAACGCCACCGATTCCAATCTCCACTTATCGAAGAATTTTAAATTTCTCGCTCAATTACCTTAACTTTGGTTTTTTACTTCACTCGGAAAAAATGAGTAGACGCTCGAGCAGAACTGTCTACGTTGGGAATCTACCTGGTGATATCCGTGAAAGGGAAGTTGAAGATTTATTTCTGAAGTATGGACACATAACTCACATAGATCTAAAGGTTCCCCCGAGACCCCCTGGTTATGCCTTTGTGGAGTTTGAAGATGCTCAAGATGCTGAGGATGCAATTCGTGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGCCTGCCCATGGTGGACGTGGTCATTCATCCTCAAGAGATCGACACAGCAGTCACAGCAATGGACGGGCTGGACGTGGGGTATCCAGGCGCTCCGAATATCGTGTTCTAGTTACTGGACTGCCCTCTTCAGCATCCTGGCAGGATCTTAAGGATCACATGCGCAAGGCAGGAGATGTTTGCTTTTCCCAAGTCTTTCATGATGGAAGGGGTACTACTGGTATTGTGGATTACACAAATTATGATGATATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAAGGGTTATGTTCGAGTGAGAGAATATGATTCAAGGCGGGATTCCTCTAGAAGTCCTAGCCGTGGCCCATCTCATTCTAGAGGAAGAAGCTATAGCCGCAGCCGTAGCCGTAGCCGTAGTTACAGTCGGGACAGGAGTCAAAGCAAATCTCCAAAGGGTAAATCTTCACAGCGTTCACCTGCTAAATCTCCATCAAAATCTCCTGCTCCTGTACGTTCAAGATCAAGGTCCCGTTCATTGTCAGGATCACGGTCCAGGTCCAGATCTCCATTGCCTGCTCGTAATAAAAGTCCCAAAAGGCGCAGTGCTAGCAGGAGTCCGAGTAGGAGCAGAAGCAGGAGTAAGAGTTTGTCTCGGTGA 1068 0.4691 MTQLFSSYFPLLSRTLKSKTLTSQPFTATPPIPISTYRRILNFSLNYLNFGFLLHSEKMSRRSSRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRAGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGPSHSRGRSYSRSRSRSRSYSRDRSQSKSPKGKSSQRSPAKSPSKSPAPVRSRSRSRSLSGSRSRSRSPLPARNKSPKRRSASRSPSRSRSRSKSLSR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02375 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 134 IPR000504 GO:0003723
Phco2g02375 355 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 233 IPR000504 GO:0003723
Phco2g02375 355 MobiDBLite consensus disorder prediction 244 355 - -
Phco2g02375 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 247 IPR000504 GO:0003723
Phco2g02375 355 MobiDBLite consensus disorder prediction 329 344 - -
Phco2g02375 355 MobiDBLite consensus disorder prediction 131 165 - -
Phco2g02375 355 MobiDBLite consensus disorder prediction 288 328 - -
Phco2g02375 355 MobiDBLite consensus disorder prediction 131 166 - -
Phco2g02375 355 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 140 IPR000504 GO:0003723
Phco2g02375 355 Gene3D - 54 168 IPR012677 -
Phco2g02375 355 MobiDBLite consensus disorder prediction 273 287 - -
Phco2g02375 355 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 59 168 - -
Phco2g02375 355 SUPERFAMILY RNA-binding domain, RBD 63 233 IPR035979 GO:0003676
Phco2g02375 355 Gene3D - 169 246 IPR012677 -
Phco2g02375 355 CDD RRM2_SF2_plant_like 169 244 - -
Phco2g02375 355 CDD RRM1_SF2_plant_like 66 136 - -
Phco2g02375 355 FunFam serine/arginine-rich splicing factor SR34A-like 169 246 - -
Phco2g02375 355 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 57 340 - -
Phco2g02375 355 SMART rrm1_1 66 136 IPR000504 GO:0003723
Phco2g02375 355 SMART rrm1_1 170 243 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02375 Phco-Chr2 54053241 54058119 Dispersed/Wgd