Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02349 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAATAATGGGGAAGAAGTTCATCAAGAAAGCCAACACCAACAGCCACAAATCCAACTTCATGACACTAGTCCAGGACCATCCACCGCTTGCAATAGCAATGCTTCCACTAATCAACAAGCCAAGAAGAAAAGAAACCTTCCTGGAACCCCAGATCCCAGTGCTGAAGTTGTTGCTTTATCACCAACCACATTAATGGCAACCAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCGTGGAAACTGAGGCAACGAACAAGCACTGAGGTGAAGAAACGGGTGTATGTTTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCACTAGGAGACCTCACTGGCATCAAAAAGCATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCAAAGAGATACGCAGTGCAATCTGATTGGAAGGCCCACCAGAAAACTTGTGGCACCAGGGAATACAAATGTGATTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCTTTCTGTGACGCATTAACCGAAGAAAACAACCGAGTGAACCAGGGATTAACAAGTGGCATGCCACCAAACCTGCAAAGTCAAATACCGGATCTTATGTCTACCATGCCTCTCAACCCTAGTCCCAACACAGCATATGACCCTAAGAACCCACTAAAATCACTCCCACAAGAACTTGTCCCAATACCATTCAAGTCTATGAGCATGGGAGGGGGCATGTTCTCCACCAATGCAGGTGCACTTTTTGGTGGCCCAAAAAGCATGCCTCCCTCTTCTTCCAGCCTCCAACTAGGTTCCAACACATCATCAAGCTTCAATTACTTGCAAGACAACAAAAGCGGAGGACTAATTGCTGCCTCAGCTCAGATGTCTGCAACAGCTTTGTTACAGAAAGCAGCCCAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCCATGATGCAAAAAGGCTTTGTTACTGGCACTACTGCTCCTGATCATGTTTCTTCCACTAGACCACCATATTCTGGTACCATGCTGCAGCATAACAACTCTTATGAACATTTCTGTCCGCAGCCTGATCTTTCCAACATGGCTGGGGTGAGTGGTGGAGGAGCATTCATCAACCAACTGTTTCATAAAGGACAAGAAATTTCACAAGTTTTTGACACCAACACTGCCGGGTCTAATATGAATGATGTGGGAATGTTCAGCCAAATGCCAATGGGGAGTGACCACAACCCGGGATTGATGAAGAATGTTGAACAAGAGGTTAGTAATTGTTCTAGTTTGATCCACGGAAGAGATGTGGTTGAAGGTAACCCAATGCAGCCATCAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCAAGAGTCATGAATCATTTTCATCACCATTTTCCACACGAGGATTCAGCTATGGAGGAACACATGTGGGATGTTTGA 1572 0.4567 MSNISGDEGSFSSGNNGEEVHQESQHQQPQIQLHDTSPGPSTACNSNASTNQQAKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQSQIPDLMSTMPLNPSPNTAYDPKNPLKSLPQELVPIPFKSMSMGGGMFSTNAGALFGGPKSMPPSSSSLQLGSNTSSSFNYLQDNKSGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVTGTTAPDHVSSTRPPYSGTMLQHNNSYEHFCPQPDLSNMAGVSGGGAFINQLFHKGQEISQVFDTNTAGSNMNDVGMFSQMPMGSDHNPGLMKNVEQEVSNCSSLIHGRDVVEGNPMQPSRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSAMEEHMWDV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02349 523 MobiDBLite consensus disorder prediction 1 69 - -
Phco2g02349 523 MobiDBLite consensus disorder prediction 1 58 - -
Phco2g02349 523 SMART c2h2final6 125 155 IPR013087 -
Phco2g02349 523 SMART c2h2final6 84 106 IPR013087 -
Phco2g02349 523 SMART c2h2final6 160 180 IPR013087 -
Phco2g02349 523 FunFam protein indeterminate-domain 12-like 63 131 - -
Phco2g02349 523 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Phco2g02349 523 Gene3D Classic Zinc Finger 62 130 - -
Phco2g02349 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 503 IPR031140 -
Phco2g02349 523 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Phco2g02349 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Phco2g02349 523 Gene3D Classic Zinc Finger 138 218 - -
Phco2g02349 523 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Phco2g02349 523 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02349 Phco-Chr2 53894786 53897120 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g02349 zf-C2H2 0.0053 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02349 2 53894786 53897120 Phco2g02349 2 53894786 53897120 ECH