Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02331 ATGACCGCTGAAGCGCCGAAACCAGCGCGACCCTGCGACTACTGTGGCCACTCCACGGCGGTTCTCTACTGCAGAGCCGATTCGGCCAAACTCTGTTTCTCCTGCGACCGCGAGGTTCACTCCACCAACCAGCTCTTCTCGAAGCACACGCGTACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCCACCATACTCTGTTCCACCGACACCTCTGTTCTCTGTCAGAATTGCGACTGGGAGAAGCACAACCCCGCGCTCTCCGATTCCCTTCACCAACGGAGGCCCCTCGAAGGCTTTACCGGTTGCCCTTCAGTCTCCGAACTCTTATCTGTCGTGGGGTTTGGAGATCTCAGCAAAAAATCGCTGCTTTCTTCGCCTCAGGGAAGTGCCGCTGATGGGTTCCTCGGGTGTGAGATTGAAGGGCTTTCGGATTTGTTTGTTTGGGATGCGCCTTCTATTGTTACGATTGATGATTTGATATGTTCTTCTGCTTCTTCTCATAGCTTTCAGGCCATGGAGGTTCCTCCCCTGCCTAAGAATCGGAAGGCTGCTTGTGGGCGACACAGAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCATTGGATCCTGAACAAATTGTGCAACCAGGAAACTTGTCCTCGGCTTTTGAACGTGACGTAGAGGCTGATATCATTCCTTATCACGAGTGGCATAGAGAAAGCATTGAGCCTGTGTATCAAGTTGTTCCTCCGGACCCATCATTGAGAACTTATACTGAAGAAATTCTAGTTAAACAATCTACTTATGCTGGGGAAACTCACACCTTTGTCGACAAGGGAGGGAATCCATCCATTTCTCTCAACTCTGAAACCCTACCAACTACTCCCAAAGCTGCTGCATGTGAGTTAACAAGCCAAGAAAGAGATTCTGCATTATTACGGTATAAACAGAAGAAGAAAACAAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGTGCAGAAAGTAGGGTGAGAGTCAAGGGTCGATTTGCCAAGATGGAGCAGGAACACTAA 1059 0.4948 MTAEAPKPARPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWEKHNPALSDSLHQRRPLEGFTGCPSVSELLSVVGFGDLSKKSLLSSPQGSAADGFLGCEIEGLSDLFVWDAPSIVTIDDLICSSASSHSFQAMEVPPLPKNRKAACGRHREEILSQLRELAKSEPLDPEQIVQPGNLSSAFERDVEADIIPYHEWHRESIEPVYQVVPPDPSLRTYTEEILVKQSTYAGETHTFVDKGGNPSISLNSETLPTTPKAAACELTSQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRVRVKGRFAKMEQEH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02331 352 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 349 - -
Phco2g02331 352 CDD Bbox1_BBX-like 11 54 - -
Phco2g02331 352 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Phco2g02331 352 SMART bboxneu5 7 54 IPR000315 GO:0008270
Phco2g02331 352 SMART bboxneu5 55 97 IPR000315 GO:0008270
Phco2g02331 352 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Phco2g02331 352 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Phco2g02331 352 Pfam CCT motif 306 348 IPR010402 GO:0005515
Phco2g02331 352 Pfam B-box zinc finger 9 52 IPR000315 GO:0008270
Phco2g02331 352 Pfam B-box zinc finger 54 97 IPR000315 GO:0008270
Phco2g02331 352 CDD Bbox1_BBX-like 54 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02331 Phco-Chr2 53767432 53770616 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco2g02331 CCT 1.7e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02331 2 53767432 53770616 Phco2g02331 2 53767432 53770616 ECH
Phco2g02331 2 53767432 53770616 Phco6g00872 6 8499924 8502292 PCT