Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02319 ATGAGAAGGATGAGAGAGATGGATCCTGAACCCAGAATCGGACTTCCTCATAACCGAGGTGCCGGAGATGATTTGTACACTGAACTGTGGCGTGCATGTGCGGGATATTCCGTTTATGTTCCTCGTGTTGGAGAGCTGGTTTTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATTTACTCAGCACCAGCAAGATGGACACATGGAAATTCCTGTGTATGATTTGCCTCCTAAGATCTTATGCAGGGTTGTGTGTGTTCAATTACAGGCCGAAACTTACACTGATGAGGTTTTTGCTCAAGTTACATTAGTTCCGGAGACCAGGCAAAATAATGTTGATTTAGAGAACGAGGACAATCATGTTCCTTCCAGAACTAGAACCTACTCCTTTAGTAAGGTACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAAGAGACATGCTGATGAATGCTTCCGTCCCCTGGACATGACTCATCAAACGCCTGCACAGGAAATTGTTGCGAAGGACTTGCACGGGTTCGAGTGGCATTTTCGACACATATACCGTGGTCAGCCGAAACGACACTTGCTAACTAGCGGTTGGAGCACGTTCGTGAGTGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTTGTTAGTGGGGAGTATGGAGAAGTTCGTGTTGGGATTCGTCGGGCAATTAGACATAACAGCAATGCATCCCCGTCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCATGCTGTTGCCACAGGATCCATGTTCACTGTCTACTGCCACCCTTGGACGAATCCCTTTGAGTTTATCATTCCTCTGCAAAACTATTTGAAGTCAATTGTACCCGACTATTCAATTGGAACGAGAGTACAAATGCAGTGGGATGCTGAAGAGTCTCTAAGAAGATATGCAGGTACGATAATTGGTAACGAAGTTATTGACAGCATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCATAGTAGATGCCTTCATGCACCCTGAAAGGGTTTGTCCTTGGTGGATTGAACCATTGGAATCTTCCATGGAGAAGCACATTCCTGTTCTCCCCAACCCAAAAAAGGCACATCTACTTAACCAGAGCCCTTTGCCTGGACTAAGTGTCTTTGCCATGGATGATGCTGTTCAGAGTTCAGCCAGGCCAGCATCTCAGACTCAGAGAACGGATAGGGACTTGCAAGGACAAGATTACAGTGGCTTGAGTACTTCACGGCCATTGCAAAGACCATCATCGACTGATGTAATCCACCCATCGAAGTTCTCAATCAGTGGCTCACAATTTGGGAAGGAAAATCTGAACCAGCTCCCCTTTCACATGCAAGACATTCTTCATAAATCTCTTGGAAGACCAACGTCATTGGCTCACGAAGACTTGTCAATATCAAGTTCAAATTTAAGCTCCATTTGTTCTGAATCCCTGGGATGGCCACCTTCTGAATCTAGAAATGAAAATGATGCTCCATTTGGTCATCTTGGCAGTTGTAGTAGATACAAGCTTTTTGGAGTTAGCTTAATTGACCGCCAACCGGAGCTCCCTTCACAACAAGTTGCTGGTTTCAGCAAGACTTCAAATCTGCTTTCTACTCCTCCAATGTCTGTTACCTCCGGGAAAACATGTAAGAAGTGTCGCTCTGTCAATAATCGTAGCTGCACAAAGGTGCTTAAGCTGGGAACTGCTCTTGGAAGAGCAGTTGATCTTGGACGTTTTCGTGGATATGATGAACTCATTGCTGAGCTCGACTTGATGTTTGATTTTGGTGGCAGCTTAGTCAATGGAAGCAGTGGATGGCATGTGACCTGCATAGATGATGATGGAGACATGATGCTCTTGCGAGATTATCCATGGCAGGATTTCCAGTGTGTGGTCCAAAAGATGATCATATGTCAGAAGGATGGTATTAACAATCTCAATCCAAGCTCCTCAGCAGATCCTCCAAGTCTTCAGTGA 2028 0.4541 MRRMREMDPEPRIGLPHNRGAGDDLYTELWRACAGYSVYVPRVGELVFYFPQGHLEQVAAFTQHQQDGHMEIPVYDLPPKILCRVVCVQLQAETYTDEVFAQVTLVPETRQNNVDLENEDNHVPSRTRTYSFSKVLTPSDTSTHGGFSIPKRHADECFRPLDMTHQTPAQEIVAKDLHGFEWHFRHIYRGQPKRHLLTSGWSTFVSAKKLVAGDSCIFVSGEYGEVRVGIRRAIRHNSNASPSSSLISGHSMQLGILASASHAVATGSMFTVYCHPWTNPFEFIIPLQNYLKSIVPDYSIGTRVQMQWDAEESLRRYAGTIIGNEVIDSIRWPGSEWRCLKVQWDAIVDAFMHPERVCPWWIEPLESSMEKHIPVLPNPKKAHLLNQSPLPGLSVFAMDDAVQSSARPASQTQRTDRDLQGQDYSGLSTSRPLQRPSSTDVIHPSKFSISGSQFGKENLNQLPFHMQDILHKSLGRPTSLAHEDLSISSSNLSSICSESLGWPPSESRNENDAPFGHLGSCSRYKLFGVSLIDRQPELPSQQVAGFSKTSNLLSTPPMSVTSGKTCKKCRSVNNRSCTKVLKLGTALGRAVDLGRFRGYDELIAELDLMFDFGGSLVNGSSGWHVTCIDDDGDMMLLRDYPWQDFQCVVQKMIICQKDGINNLNPSSSADPPSLQ 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02319 675 FunFam Auxin response factor 130 234 - -
Phco2g02319 675 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Phco2g02319 675 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco2g02319 675 FunFam Auxin response factor 297 369 - -
Phco2g02319 675 Gene3D - 571 664 - -
Phco2g02319 675 Gene3D - 297 371 - -
Phco2g02319 675 ProSiteProfiles PB1 domain profile. 575 658 IPR000270 GO:0005515
Phco2g02319 675 SUPERFAMILY DNA-binding pseudobarrel domain 123 262 IPR015300 -
Phco2g02319 675 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Phco2g02319 675 SMART B3_2 132 234 IPR003340 GO:0003677
Phco2g02319 675 MobiDBLite consensus disorder prediction 404 444 - -
Phco2g02319 675 Gene3D - 130 234 IPR015300 -
Phco2g02319 675 CDD B3_DNA 131 232 IPR003340 GO:0003677
Phco2g02319 675 SUPERFAMILY CAD & PB1 domains 578 650 - -
Phco2g02319 675 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02319 Phco-Chr2 53676298 53684086 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco2g02319 AUX_IAA 1.5e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02319 2 53676298 53684086 Phco2g02319 2 53676298 53684086 ECH