Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02297 ATGGAAGTAAGGTGTTTGGAGATATTACCAAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCAGAGAAGTTTGAAGATGAGAAACAAGGAGGCCCTTTGTTGCATTGTGATCTATGTGATACAGAAGTAGTTCGCAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGCCAGTGCTTGTGTTGATAACACAACAGGAGATCTCTTCAAGAATGCAGGTTCAGTAGCAGTTGATTTGAGGAAGGAGATGATAGAGTATCTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTGATCCAGACGGTGAAGTATCAGACCATCCCTATGATATTATTTCTAATTTAGTTGATGACTTTGCAAGTTCAAAGAGGAATTTGTTAAGTCGGGTTTCTGGATGGCTATTGAGTGAAAAGAGGGAAGATAATATAGAAGATTTTGTCCAAGAGATGGAAGTGAATGGGTTTTGGACACTTGAGAGGAGAGAAAAAATTGCAGAAACTCTATTAAAAAATGTTGACCTTGCGAACTCATATCATTGCAACATGAGTTTTAATTCTGCAGAAGATCTTGCCAATCATATAGATAATTGCAACTTTAGATCTATAATATGTGAAAACGAGGGATGCAATTCTAGATTTTGTGCATCTCATTTGAAGGATCATGATTCAACTTGTCCTTTCAAGATAATTTCATGTGAACAGAAATGTTCTGCCAATATTATGAGACGCGAGATGGACAGACATTGTATAACTGTTTGTCCAATGAAGGTTGTAAATTGTCCTTTTTATGCTATCGGTTGTCGGTCAGCCGTTGCCCAATGTATGATTGAAAAACATCGTTCAGATGATCTTAATTCTCATTTGTGGCACCTCCTTAAAGGGATCTACAAAGAAGCATCGGGAGATGATCTTAACCATCGAGTGGAAGAAATTATCCAGGCATCACCAAACAACCGTTTAACAGAGGCTCGGGATGTTAGATCTTTGAACTACATTGTCAAAGATCTTGAAGCTAAGTTAGGACCTTTTAAAGTAACTGTTGTGGATAAAAGTAATTTAAAGACTGCTGACAAGAATGGTGAAGGAGAAGGAGGGGAAAATAATATGAACAACAGTGAAAAGAATACAAATGATTTAGATATTACCAATTCATCAGATAAAGTTGAAGTAAGTGATATCGAGAATACAACACAAAATGAAGATAATAAACCTACTTACGTTAAAAATGAAGATCATGAAGAGAGGACACAAACTTCAAATATGATAAATTTATCTGATAATGATAAAGCTGACCTCCGAGATGATGACAACAAAGATGTTGCAACTACTAAATTAACAATTAAGGCCAATGAAGAGAATTCTCAAACACAAAATGAAAATATATCAAATGCAGAAGTTAGTGTAAAAAATGAGGGTAGTACAGAGAATAACATAAAAAACAAATCTATTGAAGATAACAAACAAATACTTAATGAATACAATAAATTCAAAGATAAGGACAACGAGCAAAACATCCCTAATTCAGAAATGGAAGTTAAGGGTGGTGTAAACAATACTAGCAAGATCAAGGATATTGAACATGACAACTAA 1608 0.3563 MEVRCLEILPSMDMPTIDVDLGPEKFEDEKQGGPLLHCDLCDTEVVRKLAQMFLPGLASACVDNTTGDLFKNAGSVAVDLRKEMIEYLTQRSESFVAESVILEGDPDGEVSDHPYDIISNLVDDFASSKRNLLSRVSGWLLSEKREDNIEDFVQEMEVNGFWTLERREKIAETLLKNVDLANSYHCNMSFNSAEDLANHIDNCNFRSIICENEGCNSRFCASHLKDHDSTCPFKIISCEQKCSANIMRREMDRHCITVCPMKVVNCPFYAIGCRSAVAQCMIEKHRSDDLNSHLWHLLKGIYKEASGDDLNHRVEEIIQASPNNRLTEARDVRSLNYIVKDLEAKLGPFKVTVVDKSNLKTADKNGEGEGGENNMNNSEKNTNDLDITNSSDKVEVSDIENTTQNEDNKPTYVKNEDHEERTQTSNMINLSDNDKADLRDDDNKDVATTKLTIKANEENSQTQNENISNAEVSVKNEGSTENNIKNKSIEDNKQILNEYNKFKDKDNEQNIPNSEMEVKGGVNNTSKIKDIEHDN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02297 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 292 IPR013083 -
Phco2g02297 535 Pfam TRAF-type zinc finger 227 285 IPR001293 GO:0008270
Phco2g02297 535 MobiDBLite consensus disorder prediction 361 441 - -
Phco2g02297 535 ProSiteProfiles Zinc finger TRAF-type profile. 222 274 IPR001293 GO:0008270
Phco2g02297 535 MobiDBLite consensus disorder prediction 370 409 - -
Phco2g02297 535 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 35 488 - -
Phco2g02297 535 MobiDBLite consensus disorder prediction 502 535 - -
Phco2g02297 535 SUPERFAMILY TRAF domain-like 186 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02297 Phco-Chr2 53539570 53545984 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g02297 zf-TRAF 5.8e-10 CL0389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02297 2 53539570 53545984 Phco2g02297 2 53539570 53545984 ECH
Phco2g02297 2 53539570 53545984 Phco6g00182 6 1773975 1785167 PCT