Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02283 ATGCGGAGCTTCAGGATGAGAAACCTGTTGTGCCGTGTAAAGAGAAGAACAAAGAAAACCATTAGAAACAGAAAAACAACCACAGGAAACTGCATTTCCATATCAAAAGAGTTAGCACGTCTAGTGGAACAACAACATGAAGAAGAAGTTGTTGAGGATGGTTTCAGCATAAGAAGTTCTGCTCCATCACACACTCACGGTGTTCAACCCTTGGGAAATCTCTATCTGAACCCCAGTTCCATTAACTCTAGAGACACCGGCTTAGGTAATCTTCATACCCTTTCGGATGAGCTTGTTCTTGACATGCTCGGCTTTTTGGATGCTTCTTCCTTAGGGGTTTTGGCTGCTGTGAGCAAGTCTTTCTACGTGTTCACCAACCATGAACCCCTTTGGAAGAATCTCGTGTTGGAGAACCTTCTTTCTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACCTATGTTTCTGCCTGTTACCCTTCATTTGGTAACTCCGATATTGCTCTTGGGGGTCTCAAAGTTAGAGACTTTTACTCGGATTATCTTTTCCAGAGTTGGCTCTGTGCTAACCTTGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGGGGAATTTCGGTTGAGGAGTTTGTGCTGAATTTTGAGGAGCCTAATAAGCCGGTGTTGTTGGAAGGTTGTATTGATAATTGGGGTGCGTTGGGAAATTGGGATAGGGATTATTTGGTAAGATTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGATTACTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTATATTTGTTTGATCCTAAGTTTGCTGAAAAAGTTCCACAATTGGGTGATGAATATGATGTTCCAGTGTACTTTAGGGAAGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCAGACTACAGGTGGATTATTATTGGACCTGCAGGGTCTGGATCCTCTTTCCATGTTGATCCGAATTCGACCTCGGCTTGGAATGCAGTGATCAAGGGATCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCACCTGGTGTTCATCCCAGTCCTGATGGAGCCGATGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGTGCAACCAAAAATTGGAAAAAGAAACCAATTGAGTGTGTGTGTAAAGCTGGAGAGCTCATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCTATAGCCATAACCCAAAACTATGTTAGTAGGAGAAATTTGGTAAATGTCTTGGATTTTCTTAAAAGGCCAAATGCTAGCACCCTGGTATCTGGAACAAGGGATCGAGTGAATTTGTACGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCAGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAGAGGAAACTTCCCTTCTGGGATTCTGTCACAGATGCTAATGCAGGAGCTTTCAAGTTCTCTTTCTAG 1539 0.4308 MRSFRMRNLLCRVKRRTKKTIRNRKTTTGNCISISKELARLVEQQHEEEVVEDGFSIRSSAPSHTHGVQPLGNLYLNPSSINSRDTGLGNLHTLSDELVLDMLGFLDASSLGVLAAVSKSFYVFTNHEPLWKNLVLENLLSGFQYKGSWKSTYVSACYPSFGNSDIALGGLKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALGNWDRDYLVRLCGDVKFSVGPVEMKLGDYFGYSDQVREERPLYLFDPKFAEKVPQLGDEYDVPVYFREDLFGVLGNERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWKKKPIECVCKAGELIFVPSGWWHLVINLEESIAITQNYVSRRNLVNVLDFLKRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEIDELTRKEEERKIQQRKLPFWDSVTDANAGAFKFSF 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02283 512 SMART cupin_9 278 447 IPR003347 -
Phco2g02283 512 Pfam Cupin-like domain 212 430 IPR041667 -
Phco2g02283 512 ProSiteProfiles JmjC domain profile. 287 447 IPR003347 -
Phco2g02283 512 FunFam F-box protein At1g78280 182 432 - -
Phco2g02283 512 SUPERFAMILY F-box domain 84 155 IPR036047 GO:0005515
Phco2g02283 512 Gene3D - 82 159 - -
Phco2g02283 512 SUPERFAMILY Clavaminate synthase-like 204 445 - -
Phco2g02283 512 Gene3D Cupin 183 432 - -
Phco2g02283 512 ProSiteProfiles F-box domain profile. 88 134 IPR001810 GO:0005515
Phco2g02283 512 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 88 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02283 Phco-Chr2 53434073 53436481 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco2g02283 Cupin_8 2.6e-22 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02283 2 53434073 53436481 Phco2g02283 2 53434073 53436481 ECH