Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02269 ATGACCCGTTTTTCCGAGAGGCTCCGTTTGCGCTGGTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCCCTCGTTCGCTTCCTACTCTACCAAACCCTACCTTTCCTCGCTATGGACAACTTCTTCTCCGACTACCTTTCCGACGACTTCGATTCCTCCCCCTACCGTTCCCACCGCCGCTTCCTCCACGACCACGACCTCGATTTCGCCCACGAGAGGGTATACCTCCTACCCTACAGGTGGTTGGTGGAAGCGGAAGGTGAAGCTGATCGGAGAGAGGGTGTGCTTTATACGGTGAGTTGTAATTCCGATTCCGACTCCGAGATTTTGCTTCATCTGAGGAAGAAGGAGGAGGAGCGCCACAAGATTGGGGTTTCTGGTCGTCAGTATGCTTTGGTTCCCGAGGGAGTTTGGTTGCGAACACTCAAACGGTATAATGATTTTAATAATGCAGCGAAAGATGTTGGAAGCCTCTCCAATGCAGAGGATTGTTTGCCTGAATTGTTCCCCTTGCAAATTAAGATATTTGTTTCATGGGAAACCAGTTCACTGGTAGCAAAAATAAGCCTAAAGGAAAATGTGGCTGACTTCTATGAGAAAGCATGTGACATTTTCAATTCTGCATATATCCCCGTGCATATTTGGGACTTTTCAGGGCAGACGACACAGTTTTTCGTGAATGACAAATCAAGATTGCCAAATGATTCTTCTGGTCAATCTGTAAAAGAGGTTGCTTTGGAGTTACAAGTACATGGACTTCCAGATTCTATGGGGGGCAATGGGATGATTTTAGATAGGTCTCAGATGGAATGTTCACGCAGTGGTTCTGTTTCAATGAATGGAAGCACTGACAATGTGCCCCCCTGCATAACAGCCAACTATTTTCGAGGTAGTAGTTGTAGAGCAATTCGATCTTTGGGCTTGACAGGATTACAAAATCTTGGAAATACATGTTTTATGAATAGTGCTATTCAATGTCTGGCTCACACCCCAGAGCTCGTTGATTTTTTCCTTGGAGATTACCATAAAGAGATTAATTATGAAAATCCGTTGGGAATGAATGGAGAACTAGCCCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTAGAGCTATGCCCATTGCACCAAGAACGTTCAAGATGAAACTGGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGTCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGAGTGAAACGCAAGCCATATCATGAAGTTAAGGATGCAGACGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATAGTAGTTGATTTGTGCCAAGGTCAGTTTCGGTCAACACTAGTTTGCCCTATTTGCAAGAAGGTTTCTATCACATTTGACCCTTTTATGTATCTATCTCTGCCTTTACCTTCTACAACGATACGGACCATGACTTTGACGGTCATAAGCACTGACGGGATTACATTGCCTTCTACAATTACGGTAACAGTACCCAACTGTGGAACAGTGAATGATCTTATTGAGGCTTTAAGTACTTCTTGTTCTCTGAGAGAAGATGAAACCCTCTTGGTGGTTGAGATATACAGGAATAAAATTATTCGAGCATTCGAGAATCTTTCTGATTCATTAGGTGATATTAGAGATCAAGATAAAGTTGTTGCTTACCGAATGCAGAAGGATACTGAAGCAACTCCCTTGGTTGTTTTTGTCCATGAACGGTCCGCGGAAAATTCTGGGAAGGAAAGGTTTGACGGCAGGTTGTTTGGTATTCCCCTTGTTACAAGGTTGTCCAATATTTCTTGTGGATATGATATTCAAAGGGAGTTTCTGAAGTTAATCAATCCATTTTTTATGCGCACTAAAGATGTATCGGATGATTATGAAAATAATGATGGTATTAGTAAAAGACCAAGTGAAGATGATGAATTGGGGGATACTACTAACTCTTCCGCAATAGGAAATGATGCTGACTCAATCATTGGAACAGATGATGGCATACATTTGTCGACTGACTTTGAATTCTACTTACATGGAATGGAGAATGTCAAGATAATATTGGACAAACCGTTGACAGTCACAACATTTTCCAGAAAGGGGCCTGAGGTAGTTGTCTTGTGGTCGGATAAGATGCTTAAAATGTATAATACATCTTTGCTTGACTCACTGCCCGAGGTTTTCAAGTCCCAGCTATTCGCCAAGAGAATACAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCCTTCTTGAAAGAGGAACCTCTTGGACCAGAAGACATGTGGTACTGTCCTACCTGCAAAAAACCTCAGCAGGCAACTAAAAAACTAGATCTTTGGAGATTGCCGGAGATTCTTGTTGTTCATTTGAAGAGGTTCTCATACAGCCGATACTTAAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATAATCTGGACTTATCAACATATGTAGCATATGGGAATAGTCAATCTGCCAACCGCTATGTGTTGTATGCTATTAGTTGTCATTATGGAGGTTTAGGAGGAGGTCACTATACAGCATTTGTCCGATATGGCTATGATAAATGGTATGATTTTGATGACAGCAGAGTCGAATCTGTTAACGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAGTTTAG 2751 0.4224 MTRFSERLRLRWLFPKPTRFLALVSLSTLHHLCKSLVRFLLYQTLPFLAMDNFFSDYLSDDFDSSPYRSHRRFLHDHDLDFAHERVYLLPYRWLVEAEGEADRREGVLYTVSCNSDSDSEILLHLRKKEEERHKIGVSGRQYALVPEGVWLRTLKRYNDFNNAAKDVGSLSNAEDCLPELFPLQIKIFVSWETSSLVAKISLKENVADFYEKACDIFNSAYIPVHIWDFSGQTTQFFVNDKSRLPNDSSGQSVKEVALELQVHGLPDSMGGNGMILDRSQMECSRSGSVSMNGSTDNVPPCITANYFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPELVDFFLGDYHKEINYENPLGMNGELALAFGDLLRKLWVPRAMPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGITLPSTITVTVPNCGTVNDLIEALSTSCSLREDETLLVVEIYRNKIIRAFENLSDSLGDIRDQDKVVAYRMQKDTEATPLVVFVHERSAENSGKERFDGRLFGIPLVTRLSNISCGYDIQREFLKLINPFFMRTKDVSDDYENNDGISKRPSEDDELGDTTNSSAIGNDADSIIGTDDGIHLSTDFEFYLHGMENVKIILDKPLTVTTFSRKGPEVVVLWSDKMLKMYNTSLLDSLPEVFKSQLFAKRIQESVSIYKCLEAFLKEEPLGPEDMWYCPTCKKPQQATKKLDLWRLPEILVVHLKRFSYSRYLKNKLETFVDFPINNLDLSTYVAYGNSQSANRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESVNEDMIKTPAAYVLFYRKV 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02269 916 Pfam Ubiquitin carboxyl-terminal hydrolase 321 913 IPR001394 GO:0004843|GO:0016579
Phco2g02269 916 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 321 916 IPR028889 -
Phco2g02269 916 MobiDBLite consensus disorder prediction 658 673 - -
Phco2g02269 916 CDD Peptidase_C19R 763 914 - -
Phco2g02269 916 Gene3D Cysteine proteinases 309 555 - -
Phco2g02269 916 SUPERFAMILY Cysteine proteinases 319 915 IPR038765 -
Phco2g02269 916 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 322 337 IPR018200 GO:0004843|GO:0006511
Phco2g02269 916 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 258 915 - -
Phco2g02269 916 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 859 876 IPR018200 GO:0004843|GO:0006511
Phco2g02269 916 MobiDBLite consensus disorder prediction 658 686 - -
Phco2g02269 916 Gene3D Cysteine proteinases 566 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02269 Phco-Chr2 53325841 53332956 Wgd