Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02266 ATGCCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAAAAGAAATCGAGAAAATTTATTGAAGAAGGTGGAAGATCTTACCACCCTCTGTGATGTGAATGCATGTGTAATCATCTATGGTCCAGGAGATAACGTGCCAACTGTGTGGCCATCCCATGAGATTGCTAACGAGTTGCTCAACAAGTTTGAGAATGCCCCATTGCCAGATCGGGTAAGAAAAAATGTTACCCCACAAGTTTATATTGAGCAGATGAATAAAAAGATTGAAAATCAAGTCGTGAAACTCAAGAAGAGGAACGATGAGAAAGACATGTCAAATTTCATGCATAAAATACATGATGGTAAGTCTTTATCAGATCTTGATGCTAATGATATATGTCGTTTACTTTGTTATGTGGAGGGAAAATTGAAGTGTGCTGGAGGAAAAGTTGACATTTCTAAACAACAGTCATCAACTAAACCTCCAACGCCACTACTTTCTTCTCCTCTGCAGAATGATATTGATTCTTGTGCTAACATAGATCAACAAGTTTTTCCACAACAATCATCCTTAGATTCAATGAAAGAAACTGGTCCAATGAAAAGTGATTCTGATAATAATATGGCCAGCAATACGGGACTTCCACCACTACAACCACAACCACAACCACAAACACATCTTAGTGATGATAATATGGCCTTGTCTCAAGTTAATTTTGAAAGTCTGAATTTGGATGATATTGATATGGTGTTACCTTCAGCAAATTTTAATGATGTGATTGATGATAATGACTTAGGGTTTGGGATGTTGCCTCAAGATAATTTTATAGGTCTTTGTGATAATGGTGATTTAGAGCTATTATATGGGAGTTCTTCAGGTGAAATTACAGGCAATGACATATGGTCATCTTATGGAAGTTTTGGAGACATAAGTGAGAGTGATATGATGTTGCCCTTCAACAATAATGTGCAAGACAACATTAATGGAACTTCCATGGGAACAAATGTTGAAAATCAAGGTGTGTCCATTAACAATATAGAGTTATCGGGTGATCAAAGCACCTTTGGAGCCAACAATGATGGAGCTATCTTGAGGAAATCCAGTACAAACTTTGTTAGCACTACCAGTGGAGGAAACCTCAACTCTTAA 1158 0.3713 MPRRKKVTLKLIENFVARKARYKRNRENLLKKVEDLTTLCDVNACVIIYGPGDNVPTVWPSHEIANELLNKFENAPLPDRVRKNVTPQVYIEQMNKKIENQVVKLKKRNDEKDMSNFMHKIHDGKSLSDLDANDICRLLCYVEGKLKCAGGKVDISKQQSSTKPPTPLLSSPLQNDIDSCANIDQQVFPQQSSLDSMKETGPMKSDSDNNMASNTGLPPLQPQPQPQTHLSDDNMALSQVNFESLNLDDIDMVLPSANFNDVIDDNDLGFGMLPQDNFIGLCDNGDLELLYGSSSGEITGNDIWSSYGSFGDISESDMMLPFNNNVQDNINGTSMGTNVENQGVSINNIELSGDQSTFGANNDGAILRKSSTNFVSTTSGGNLNS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02266 385 Coils Coil 12 39 - -
Phco2g02266 385 ProSiteProfiles MADS-box domain profile. 2 50 IPR002100 GO:0003677|GO:0046983
Phco2g02266 385 CDD MADS_SRF_like 4 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco2g02266 385 Coils Coil 91 115 - -
Phco2g02266 385 MobiDBLite consensus disorder prediction 153 176 - -
Phco2g02266 385 MobiDBLite consensus disorder prediction 154 176 - -
Phco2g02266 385 Gene3D - 16 99 IPR036879 GO:0003677|GO:0046983
Phco2g02266 385 MobiDBLite consensus disorder prediction 189 218 - -
Phco2g02266 385 SMART madsneu2 2 61 IPR002100 GO:0003677|GO:0046983
Phco2g02266 385 SUPERFAMILY SRF-like 4 91 IPR036879 GO:0003677|GO:0046983
Phco2g02266 385 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677|GO:0046983
Phco2g02266 385 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677|GO:0046983
Phco2g02266 385 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677|GO:0046983
Phco2g02266 385 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 55 IPR002100 GO:0003677|GO:0046983
Phco2g02266 385 MobiDBLite consensus disorder prediction 189 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02266 Phco-Chr2 53297747 53298904 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco2g02266 SRF-TF 3.7e-10 No_clan