Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02265 ATGTTAGTGCTCTCCCTTTTGGTCTCTTCTCCTTCTTGGAGAACCTTTTTTCTACACACCAATACCATTAACTTAGAAATCATCTTTTGGAGGGCGTATATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTTTGTGGGGGCCTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGGTGAGTCTTGTGTACAAATGAAACCCTTTTCATTGGAGCTTCCTAGCTGCATAGACCAACATGCTGCCAATAAGCCTTCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACATACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAACGCTTCAGACAACCATATCACTTCAGCCATCACTAGCTGACTCTCATTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTTCTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCGCGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGAGGTCGCTTCTTGAACACAAGAAAATCTGCTAATGGAAATGGCAAAACTGGAAATGAAGTGCATGAAACTGTAGGTGAACGATTGCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAGGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCGGGCTCAGAAGTGACTAGCATGTATTCGCGTGGAGGTCTTGAAAGATTTTCCCTCAATCATTTTGGATCTTCTGTGCACACTCTGGTAGACATGATAGATGGTGGGCGTGGTATGATCATACCCACCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA 1092 0.4396 MLVLSLLVSSPSWRTFFLHTNTINLEIIFWRAYMAMQTVYLKEHEGNAPNFVGALSSAASAPWWSAFGSQPVHGGESCVQMKPFSLELPSCIDQHAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSANGNGKTGNEVHETVGERLHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLERFSLNHFGSSVHTLVDMIDGGRGMIIPTKWAAAAGNCCNLKV 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02265 363 SMART cbf3 192 253 IPR001289 GO:0003700|GO:0006355
Phco2g02265 363 PRINTS CCAAT-binding transcription factor subunit B signature 196 218 IPR001289 GO:0003700|GO:0006355
Phco2g02265 363 PRINTS CCAAT-binding transcription factor subunit B signature 227 250 IPR001289 GO:0003700|GO:0006355
Phco2g02265 363 ProSiteProfiles NF-YA/HAP2 family profile. 193 253 IPR001289 GO:0003700|GO:0006355
Phco2g02265 363 Gene3D - 193 255 - -
Phco2g02265 363 MobiDBLite consensus disorder prediction 242 312 - -
Phco2g02265 363 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 196 250 IPR001289 GO:0003700|GO:0006355
Phco2g02265 363 MobiDBLite consensus disorder prediction 274 312 - -
Phco2g02265 363 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 98 316 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02265 Phco-Chr2 53279076 53283478 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco2g02265 CBFB_NFYA 1.2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02265 2 53279076 53283478 Phco6g00132 6 1269317 1273053 PCT