Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02257 ATGGAGAGAGGGTGGAAGGCTAATAGTGTTGAGATTTCACCAAAGTGTCCCAGGTGTACTTGTTCCAATACCAAGTTCTGCTACTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGCAAAAGTAGAAGGGGTAGATACAATAAGACCTTAAGACAAGCCAATAGCCCAGTTGGGCATTCTGATTTAAGGCCTTCATCTTCAGTGATGTCTGATGGGCCAAATATTGATATAGCTCAAGTCTATGCAAGTTTTCTCAACGTGAAGCCAGATCAAGTGCAAACATTTTGCTCTCCTTCTCCTGAGTATTCAAGCATAATTAACACTGATTTTGGCCACAGTGCTTTGTCTGAAGAGCATGGTCCCGGGCGCTTGCATTTTCTTGAACAGCCCACAGAATCCTATTTTGGTGAGGATATCGAAATGTACTTTTGTGGGTTGAACTCTATCCAGAAGCATAAAGAATATAGTAGCAGTCATGATACAACAGTTACAAAAACAAATTTTGAGTTGCCCCCATTACCAGGTGAAGATGCAGAAACCTCACATGGTAATGTGTTGTGGTCCAATTCTGAGATGATGGTAGATCATGGTTTGCAAGCCACCCAATGGCCCCTTTTTGAACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTGCCAAGGGATGCTTCTTTTTCGACGCCTTGA 783 0.4381 MERGWKANSVEISPKCPRCTCSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGRYNKTLRQANSPVGHSDLRPSSSVMSDGPNIDIAQVYASFLNVKPDQVQTFCSPSPEYSSIINTDFGHSALSEEHGPGRLHFLEQPTESYFGEDIEMYFCGLNSIQKHKEYSSSHDTTVTKTNFELPPLPGEDAETSHGNVLWSNSEMMVDHGLQATQWPLFEPEAYDADFLMGNCWSHFDLPRDASFSTP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02257 260 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Phco2g02257 260 Pfam Dof domain, zinc finger 14 68 IPR003851 GO:0003677|GO:0006355
Phco2g02257 260 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
Phco2g02257 260 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 169 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02257 Phco-Chr2 53231182 53231964 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Phco2g02257 zf-Dof 1.8e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02257 2 53231182 53231964 Phco2g02257 2 53231182 53231964 ECH
Phco2g02257 2 53231182 53231964 Phco6g00125 6 1201752 1202642 PCT