Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02253 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCAGGTGCCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCAGGCTACATCCACTACTCCGACGCGCCGTCGCAGCCCCCTCCCTCACACGCTGCGGGAAATCTCGTGTTTCTCAACCCCGCCGCAGTTGCCGGCACCAACAGCAATACCTCCTTCAACCCTCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGAATCCCCCTCCCCGCTTCCCAAGACCTCAACCACCACTCCATGCACGCGCACCACGACGTCTCGGCACTGCATGGCTTCCTCCCGCGCATGCAGTACAATCACTGGAACGCGCTTGACCCGGCCTCGGCGGCGCGTGAGACCCCACGCGCACAGCAGGGTTTGTCTCTGGGGCTAGGGTCGTTCCGGGAGGGTCAGGCAGCGGGGATGTCAGGCGATGAGTTGCGCGTGTCGGGCGGTTCGCCGTCGTCGGCGTCTGGGGTTACCAATAATGGAGCTTCGGGCATTCAGAGCGTACTCTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAACTTTTAGAAGAGGTTGTGAATGTTAACAATGGGACTGGCGAGCTGGGTAAAAAGAGTGGTGGACAGAACAAGGTGATTGGAGAATCATCCGCAGCAGGTAGTGGAGATGGTTCAGTTGTTGGGGAAGGGAACGGAAAACGTACCTCTGAGCTATCGACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCAAAACTAATTGCCATGCTTGAAGAGGTGGAGCGAAGGTACAGGCAGTACCACCAGCAGATGGAGATAGTGGTATCGTCGTTTGAGCAAGCTGCGGGGATTGGGTCTGCGAGGACATACACTGCCCTTGCATTGCAAACAATCTCTAAGCAGTTTCGGTGTTTGAAAGATGCAATTGCAGGGCAGGTTCGAGCTGCTAACAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATAGAAGGTTCGAGGCTCAAATATGTGGACCATCATCTAAGGCAGCAACGAGCTCTCCAACACTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGCGGGGATTACCTGAAAGATCTGTTTCTGTTCTTCGTGCCTGGCTCTTCGAACACTTCCTCCACCCGTATCCCAAGGACTCGGACAAACACATGTTGGCAAAACAAACAGGGCTAACAAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTAGAGGAAATGTACTTGGAAGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCTACGAAAATGGCAGCCCCACCAGAGAGAGGTCCTTCCAATGAAACCGAGGCTAAAAGTTTTAATTCCAAACAAGAGGTTTCAAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCATCAACATCACAACTTGGTGGGAATGTGAGAAACCAATCAGGATTCAGCTTCATGGGATCATCAGAGCTAGAAGGGATCACACAAGGAAGTCCGAAGAAAGCAAGGAATCATGAGATGATGCATTCCCCAAATAGTGTACCTTCAATGAACATTGATGTGAAGCCCAATGAGGCAAACAATGAACAACTCTCAATGAAATTTGGGGACGAAAGGCAAGGCAGAAACGAATCCTCTTTCATGGTAAACCAAACAAACTTCATTGGTGGTTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAGTTTGCCCCAAGGTTTTCAGGTAATGGCGTTTCCCTTACTCTTGGTCTTGACTCATTACCCGGAACCCATCAAACATTCCTCCCAAACCAAAACATTCAACTGGGTAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTAGCATAAACACTTCCTCTCCTCACTCTTCAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCGCAATTGTTGCCAGACTTTGTGACTTGA 2037 0.4968 MATYFHHGNSEIQSGAADGLQTLVLMNPGYIHYSDAPSQPPPSHAAGNLVFLNPAAVAGTNSNTSFNPHAPPSHTQQFVGIPLPASQDLNHHSMHAHHDVSALHGFLPRMQYNHWNALDPASAARETPRAQQGLSLGLGSFREGQAAGMSGDELRVSGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGTGELGKKSGGQNKVIGESSAAGSGDGSVVGEGNGKRTSELSTAERQEIQMKKAKLIAMLEEVERRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRALQHLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQNGSEDKSSKSNEDSSTKMAAPPERGPSNETEAKSFNSKQEVSKSQNTAMVSVSRPSTSQLGGNVRNQSGFSFMGSSELEGITQGSPKKARNHEMMHSPNSVPSMNIDVKPNEANNEQLSMKFGDERQGRNESSFMVNQTNFIGGFGQYPIGDIGRFDAEQFAPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGSINTSSPHSSAAYESISMQNPKRFAAQLLPDFVT 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02253 678 CDD homeodomain 362 423 IPR001356 GO:0003677
Phco2g02253 678 MobiDBLite consensus disorder prediction 144 169 - -
Phco2g02253 678 SUPERFAMILY Homeodomain-like 363 429 IPR009057 -
Phco2g02253 678 MobiDBLite consensus disorder prediction 640 659 - -
Phco2g02253 678 MobiDBLite consensus disorder prediction 203 242 - -
Phco2g02253 678 FunFam BEL1-like homeodomain protein 9 365 427 - -
Phco2g02253 678 MobiDBLite consensus disorder prediction 516 543 - -
Phco2g02253 678 Coils Coil 246 273 - -
Phco2g02253 678 Gene3D - 365 444 - -
Phco2g02253 678 SMART HOX_1 362 426 IPR001356 GO:0003677
Phco2g02253 678 MobiDBLite consensus disorder prediction 466 501 - -
Phco2g02253 678 MobiDBLite consensus disorder prediction 433 449 - -
Phco2g02253 678 MobiDBLite consensus disorder prediction 641 659 - -
Phco2g02253 678 ProSiteProfiles 'Homeobox' domain profile. 359 422 IPR001356 GO:0003677
Phco2g02253 678 Pfam Associated with HOX 178 313 IPR006563 -
Phco2g02253 678 SMART prehox3 173 314 IPR006563 -
Phco2g02253 678 MobiDBLite consensus disorder prediction 433 501 - -
Phco2g02253 678 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 449 - -
Phco2g02253 678 MobiDBLite consensus disorder prediction 203 219 - -
Phco2g02253 678 Pfam Homeobox KN domain 379 418 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02253 Phco-Chr2 53197500 53200340 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco2g02253 POX 8.8e-48 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02253 2 53197500 53200340 Phco2g02253 2 53197500 53200340 ECH
Phco2g02253 2 53197500 53200340 Phco6g00122 6 1160722 1163496 PCT