Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02249 ATGCTCCACTCTTCGCTAACTCTTCTCTTTACCCTCCTCTTTTCCCTCACCACTGCCGACCCGCACGAAGTCGAAATACTACGGCAATTCCGAAACGGGTTGGACAACCCGGACCTGTTGCCGTGGCCGGACAGCGGCGATGACCCGTGTGGCTGGAAGTACATTTTCTGCGACAATAACAACCGTGTAAACCAGATTCAGGCGAAGGGATTGAACCTGAGCGGTCCTCTGGCGCCGAACCTGAACCAGCTCACGAATCTCTTCAACGTGGGCCTCCAGAACAACAGGCTCAACGGTCCATTACCCTCCTTCCGCGGCCTGTCAAATCTCAAATACTTGTATCTTGACAACAACAACTTCGACTCCATCCCTTCAGATTTCTTCGACGGGCTCCAGAGTTTGGAAGTGCTCGCGTTGGACAATAATAACCTCAACGCCAGCTCTGGCGGCTGGCACTTACCGCAGACGCTCCAGGAGTCAACGCAGTTGACCAATCTCTCCTGCATGGGCTGCAACCTCGCCGGCCCATTACCGGAGTTTCTCGGAACGATGAACTCACTGTCGTTTTTGAAGCTCTCCAACAACAACTTAACGGGCGAGATTCCCCTGGGTCTAAACGACTCCGCGTTGCAGGTTCTCTGGCTGAATAACCAGCAGGGGGAGTGTCTTACTGGAAGAATTGACGTTGTGGCCTCCATTGTTTCGCTCACGAGTTTGTGGCTTCACGGGAACTCGTTCACTGGAACGATTCCCGATAACATTGGGGATTTGAGCTCTCTACGGGAACTTAACCTTAATGGGAACAACCTCGTTGGGTTAGTTCCTCAAGGTTTGGGTGACTTGAAGCTGGACAAGCTGGACTTGAACAACAACCATTTTATGGGTCCGATTCCCAATTTTAAAGCGGCTCAAGTGTTTTATGATTTTAACAACTTTTGTGTAAACAAGTCAGGAGTTCCTTGCGCGTTTGAGGTGACGGCGCTGCTGGGGTTTCTTGGGGGGTTGAATTATCCTGAAAATTTGGTTGACTCGTGGAATGGGAATGATCCTTGTGGGGGTCAGTGGTTGGGGATAAAGTGTAATGTTGATGGAAAGGTGAATATGATTAATTTGCCTAATTTGAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGGTTCTCTTGTTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTGCGGTGCCTGGTAATTGGAGTAGTTTGACATCTTTGAAATTGTTGGATCTGAGTGGAAATAACATTTCTCCTCCATTGCCTTTGTTTAAGACTGGATTGAAACCTATTGTTAATGGGAATCCTCTCTTTAATGGTGGTGCCGAAAATCCTTCATCAGGGAGCAAGAACCCATCATCTGGATCTGGGAATCTCGACCCTGCATCGGGTCAGTCCAATTCTAGTTCGAGTGATTCTCGTGAAACTAAGAAATCTAAACGGAAAGGGTTGGTTTCCATTGTTGCTCCGATTGCGGGTGTGGCAGCTGCGGCTTTTCTGCTCATTCCACTCTATGCATATTGTTTCAAAAGCAGGAAGGGTGGCTTCCAGGCTCCAACCTCACTGGTAATTCACCCTAGGGATCCATCGTATTCAGACAGTGTTGTGAAGATTGCTGTTGCTAACAATACCAATGGAACCATTTCCACTTTGACAGGGAGTGGTTCTGGGAGTAGGAATAGTAGTGTGAATGGGGAGTCTCATGTCATTGACGCTGGAAATCTTAGAATATCAGTTCAAGTTCTCAGGAACGTGACCAAAAATTTTGCGCCCGAGAATGAGCTTGGCCGTGGTGGATTTGGAGTTGTTTATAAGGGAGAGTTGGATGATGGAACTAAAATTGCAGTGAAACGAATGGAAGCTGGTGTGATTAGTAGCAAGGCATTGGATGAATTTCAGGCCGAGATTGCGGTTCTATCAAAAGTCCGGCACCGGCATCTGGTGTCTCTTTTGGGTTATTCTATAGAAGGTAATGAAAGGATTCTAGTGTATGAATATATGCCACAAGGGGCTCTAAGTAAGCATCTTTTCCATTGGAAAAGCCTTGAACTGGAGCCACTCTCTTGGAAGAGGAGGCTCAATATTGCATTGGATGTTGCCAGAGGGATGGAGTATCTTCATACTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGCCGTCAAATATCTTGCTTGCTGATGATTTCAGAGCAAAGGTCTCAGATTTTGGTTTGGTAAAACTTGCTCCTGACGGTGAAAAATCTGTAGTTACCAGGCTTGCTGGTACTTTCGGATATTTGGCGCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTCGGGGTTGTGCTAATGGAGCTATTGACTGGATTAATGGCACTTGACGAGGACAGACCTGAGGAAAGCCAATACTTAGCAGCGTGGTTCTGGAGTATAAAATCAGATAAGAAGAAGCTAATGGCTGCTATTGATAAAGTCCTTGATGTTAAGGAAGAAACATTTGAGAGCGTCTCCATCATTGCTGAGTTAGCAGGGCACTGCACAGCCAGAGAACCAGGCCAACGACCAGAGATGGGTCATGCCGTAAATGTACTGGCACCGCTTGTTGAAAAATGGAAACCCTTTGATGATGAGGCTGAGGAGTATTCCGGGATTGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACATGAGTTATATGGACCTAGAAAACAGTAAGAGCAGTATCCCCGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCAGCTGATGGGCGTTGA 2829 0.4691 MLHSSLTLLFTLLFSLTTADPHEVEILRQFRNGLDNPDLLPWPDSGDDPCGWKYIFCDNNNRVNQIQAKGLNLSGPLAPNLNQLTNLFNVGLQNNRLNGPLPSFRGLSNLKYLYLDNNNFDSIPSDFFDGLQSLEVLALDNNNLNASSGGWHLPQTLQESTQLTNLSCMGCNLAGPLPEFLGTMNSLSFLKLSNNNLTGEIPLGLNDSALQVLWLNNQQGECLTGRIDVVASIVSLTSLWLHGNSFTGTIPDNIGDLSSLRELNLNGNNLVGLVPQGLGDLKLDKLDLNNNHFMGPIPNFKAAQVFYDFNNFCVNKSGVPCAFEVTALLGFLGGLNYPENLVDSWNGNDPCGGQWLGIKCNVDGKVNMINLPNLNLSGSLSPSVANLGSLVEIRLGGNDISGAVPGNWSSLTSLKLLDLSGNNISPPLPLFKTGLKPIVNGNPLFNGGAENPSSGSKNPSSGSGNLDPASGQSNSSSSDSRETKKSKRKGLVSIVAPIAGVAAAAFLLIPLYAYCFKSRKGGFQAPTSLVIHPRDPSYSDSVVKIAVANNTNGTISTLTGSGSGSRNSSVNGESHVIDAGNLRISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERILVYEYMPQGALSKHLFHWKSLELEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFRAKVSDFGLVKLAPDGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWSIKSDKKKLMAAIDKVLDVKEETFESVSIIAELAGHCTAREPGQRPEMGHAVNVLAPLVEKWKPFDDEAEEYSGIDYSLPLNQMVKGWQEAEGKDMSYMDLENSKSSIPARPTGFADSFTSADGR 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02249 942 MobiDBLite consensus disorder prediction 919 942 - -
Phco2g02249 942 ProSiteProfiles Leucine-rich repeat profile. 109 130 IPR001611 GO:0005515
Phco2g02249 942 FunFam Receptor-like kinase TMK4 21 318 - -
Phco2g02249 942 FunFam Leucine-rich repeat receptor-like kinase 323 447 - -
Phco2g02249 942 PANTHER OSJNBA0070M12.3 PROTEIN 6 942 - -
Phco2g02249 942 Gene3D Ribonuclease Inhibitor 323 444 IPR032675 -
Phco2g02249 942 MobiDBLite consensus disorder prediction 446 479 - -
Phco2g02249 942 SMART serkin_6 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02249 942 Gene3D Transferase(Phosphotransferase) domain 1 674 892 - -
Phco2g02249 942 ProSitePatterns Protein kinases ATP-binding region signature. 602 624 IPR017441 GO:0005524
Phco2g02249 942 SUPERFAMILY L domain-like 42 299 - -
Phco2g02249 942 Gene3D Phosphorylase Kinase; domain 1 560 673 - -
Phco2g02249 942 SUPERFAMILY L domain-like 324 434 - -
Phco2g02249 942 Pfam Leucine rich repeat N-terminal domain 324 361 IPR013210 -
Phco2g02249 942 Pfam Leucine rich repeat N-terminal domain 22 58 IPR013210 -
Phco2g02249 942 Pfam Protein tyrosine and serine/threonine kinase 599 870 IPR001245 GO:0004672|GO:0006468
Phco2g02249 942 Pfam Leucine rich repeat 235 293 IPR001611 GO:0005515
Phco2g02249 942 Pfam Leucine rich repeat 108 151 IPR001611 GO:0005515
Phco2g02249 942 FunFam receptor protein kinase TMK1 674 891 - -
Phco2g02249 942 FunFam receptor protein kinase TMK1 558 673 - -
Phco2g02249 942 ProSiteProfiles Protein kinase domain profile. 596 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02249 942 SMART LRR_typ_2 257 280 IPR003591 -
Phco2g02249 942 SMART LRR_typ_2 131 160 IPR003591 -
Phco2g02249 942 SMART LRR_typ_2 107 130 IPR003591 -
Phco2g02249 942 SMART LRR_typ_2 411 433 IPR003591 -
Phco2g02249 942 SMART LRR_typ_2 184 208 IPR003591 -
Phco2g02249 942 MobiDBLite consensus disorder prediction 443 486 - -
Phco2g02249 942 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
Phco2g02249 942 SUPERFAMILY Protein kinase-like (PK-like) 580 872 IPR011009 -
Phco2g02249 942 CDD STKc_IRAK 602 875 - -
Phco2g02249 942 Gene3D Ribonuclease Inhibitor 20 319 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02249 Phco-Chr2 53112538 53115577 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Phco2g02249 PK_Tyr_Ser-Thr 4.5e-46 CL0016