Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02226 ATGAAGCTTCCTTCCCTACTCCACAAGAACTCACACCCCAACACCACCGCCAAACCTTCTTCCACTTCCTGGCCCTGGCCGTCTTGCCACCAACCTCGAACCCTCTCTTTTCGAGCCCCAAACGATGTCGCTTTCAAAACCATCAACCCCGCCTACTTGGACATGCCCGAGAGCTCCCACTCCTTCTTCACTGTCTCTCCTGACTCCGGAAGCTTCTCAACCGCTTCAGAAGAAGATTCTAGAAGACCCGATTCTCTTGAGACCCTCATTCGCCCCTTGCGTTCCGACCGTTTGTTCTTCCAGCCCGACCAGACAAGCTCCATATTAGAGTCCAAAGTAGGAACATCAGCACCAACACCAACAGAAAAACCTACACCAACAGCAACAGAAAAACCTACAGCAACAACAACAACAACGTTGCCCTTCGAAGACAGCGTGGTTATGTCTGTAGAGTCTCAGGACCCTTACGTGGACTTCCTCAGGTCCATGGAAGAGATGGTAGAAGCCCAGTGCGTTAAAGACTGGGATGGTCTCCAAGAGCTTTTGTGTTGGTATTTAAAAGTCAATGGAAAAAGCAACCATGGTTATATTGTTGGTGCTTTCATTGATTTATTGGTGACTTTTTCTTCCTCCACTGGTTCTTCTTCTGATATAAACTCTCATTCTCCTTCCTCCCCTTTATCATTCTACAGCTCTTCTCTCTCTTCCTCTTGCAGCACTCGCTGTGTTTCCTGTTTGGAAGCTGAGGACGAGGTTCATATAGCTACCACTAGTTCTTCTTTCTTGTTAGAACAAGTTAGGAAAGACAGGACTTCATCTTCATCCTCTTTGAATTAA 837 0.4707 MKLPSLLHKNSHPNTTAKPSSTSWPWPSCHQPRTLSFRAPNDVAFKTINPAYLDMPESSHSFFTVSPDSGSFSTASEEDSRRPDSLETLIRPLRSDRLFFQPDQTSSILESKVGTSAPTPTEKPTPTATEKPTATTTTTLPFEDSVVMSVESQDPYVDFLRSMEEMVEAQCVKDWDGLQELLCWYLKVNGKSNHGYIVGAFIDLLVTFSSSTGSSSDINSHSPSSPLSFYSSSLSSSCSTRCVSCLEAEDEVHIATTSSSFLLEQVRKDRTSSSSSLN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02226 278 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 61 210 IPR038933 GO:0045892
Phco2g02226 278 Pfam Transcriptional repressor, ovate 152 207 IPR006458 -
Phco2g02226 278 MobiDBLite consensus disorder prediction 8 30 - -
Phco2g02226 278 MobiDBLite consensus disorder prediction 109 135 - -
Phco2g02226 278 ProSiteProfiles OVATE domain profile. 146 207 IPR006458 -
Phco2g02226 278 MobiDBLite consensus disorder prediction 1 30 - -
Phco2g02226 278 NCBIfam uncharacterized plant-specific domain TIGR01568 146 208 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02226 Phco-Chr2 52940648 52941484 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Phco2g02226 Ovate 1.1e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02226 2 52940648 52941484 Phco6g02987 6 51055930 51056661 ECH
Phco2g02226 2 52940648 52941484 Phco2g02226 2 52940648 52941484 ECH
Phco2g02226 2 52940648 52941484 Phco6g00094 6 946226 946939 PCT