Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02217 ATGTGTACGAGAGATATGCGAGGTCCATCAAAACAGGCAGTGATTCCCCCAGCTTCCACATCAAATGAACCCATAATCATCATCATCATCATCACGCCTCTTCTCTTCTCCTCGCTTCTTCCTTCTTTATTCTCTTTACAGCTCTCAATGTCGATAAACCACTACTCACCAGAAGCCAGACTATACTGGAGCGAGCAACAACAAGCCGCCACGTGGCTGGGAAACTCTCACACTCCTCGTTTCAACCTGAACGACCACCAGGAGGAGGTGGAGGAGGAGGAAGAGGAGGTGGCGGCTGCGGAGAACCGTGGTGGTGGGGCGGCGGAAGAGGAGAAGGAAACGATGTTCGAGAAGCCGCTAACGCCAAGCGATGTGGGGAAACTGAACCGGTTGGTGATCCCGAAACAGCACGCGGAGAAGCACTTCCCGCTGGAGTCTTCGTCGTCGTCGTCTTCGTGCGGTGACAGCGCGAAAGGTGTGTTACTGAGTTTCGAGGACGAGTCCGGTAAGTGCTGGCGTTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTATGTTTTGACCAAAGGATGGAGCCGTTACGTCAAGGACAAACGCCTCCACGCTGGCGACGTCGTTTTCTTCCACAGACACCGAACCCATCCCCAACGGTTCTTCATCACCTCCACCCGCCGCCAACCGAACCCCCCCGCTCAGGTTAACTCCACCGTCACACCTTCCTTCTACTCTACGCAGCCTTATCCTGCGCATCACCTCCCTTTCCCATACCAACCTCTCTCTCTTCATGCACCACCAGGTGGAGGGTCCCAAGGACAGAACCAAACGACACCGGAAGGGAACAGTTCAGGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTCATAATGATTCCCAAAACTCCACGCCACAATGCTCTTACGCTCTCTCCTCAACGCTTTCCCACCACCACCGCCACTTACACCGTCAAACCTCTTACTCTTCTTCTTCCCCAAATCCTCACCATCACATGCTACGTCAACAACCATAA 1041 0.537 MCTRDMRGPSKQAVIPPASTSNEPIIIIIIITPLLFSSLLPSLFSLQLSMSINHYSPEARLYWSEQQQAATWLGNSHTPRFNLNDHQEEVEEEEEEVAAAENRGGGAAEEEKETMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLESSSSSSSCGDSAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVFFHRHRTHPQRFFITSTRRQPNPPAQVNSTVTPSFYSTQPYPAHHLPFPYQPLSLHAPPGGGSQGQNQTTPEGNSSGGRVLRLFGVNMECQPHNDSQNSTPQCSYALSSTLSHHHRHLHRQTSYSSSSPNPHHHMLRQQP 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02217 346 MobiDBLite consensus disorder prediction 266 282 - -
Phco2g02217 346 Gene3D - 104 233 IPR015300 -
Phco2g02217 346 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 74 306 IPR044800 GO:0003700
Phco2g02217 346 CDD B3_DNA 115 213 IPR003340 GO:0003677
Phco2g02217 346 ProSiteProfiles B3 DNA-binding domain profile. 116 226 IPR003340 GO:0003677
Phco2g02217 346 Coils Coil 83 110 - -
Phco2g02217 346 SMART B3_2 116 224 IPR003340 GO:0003677
Phco2g02217 346 SUPERFAMILY DNA-binding pseudobarrel domain 112 224 IPR015300 -
Phco2g02217 346 MobiDBLite consensus disorder prediction 328 346 - -
Phco2g02217 346 MobiDBLite consensus disorder prediction 85 115 - -
Phco2g02217 346 MobiDBLite consensus disorder prediction 316 346 - -
Phco2g02217 346 Pfam B3 DNA binding domain 116 220 IPR003340 GO:0003677
Phco2g02217 346 MobiDBLite consensus disorder prediction 259 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02217 Phco-Chr2 52824911 52827590 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco2g02217 B3 1e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02217 2 52824911 52827590 Phco2g02217 2 52824911 52827590 ECH
Phco2g02217 2 52824911 52827590 Phco6g00534 6 5164055 5165939 PCT