Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02179 ATGGTGGTTGAAGAGAGTGAGATGAACTCCCAAGGTGAGGTGGAATCAAGACTCCAACAAGATGCCAACAAGAACCACCATTCTCAGTTCTCACCATCATCCATGGGAAGACAAACCTCCATATACTCTCTTACACTGGACGAGTTCCAGCACACTCTATGTGAGACCGGCAAAAACTTCGGCTCCATGAACATGGACGAGTTTCTCAGCAGCATCTGGAACGCAGAAGAAAACCAAGCCATAATAACCTCCTCCAACCTCCCTCTTTCCCAACCCTTCACTGACAAAGAAGCAACAACGTTAAGGAAACAACCAAGCCTACCTCGTCAACCCTCACTGTCTCTCCCTGCACCTCTATGCAGGAAAACCGTGGATGAAGTTTGGTCCCAGATTCAGAAAGAACAACAAAACAACAATGTTCTGAATAATACCGAGTCTGCCCCTCGCCAGCCCACTTTTGATGAGATGACTTTGGAGGATTTTTTGGTCAAGGCTGGGGTGGTTCGGGAACCACCATGTGCACCACCACTGTTGCCTCATCACTCTCACCACCTCCAGCAGCAGCAGCAGCATTACACGAATAACAATGGTGCAATGCCAGGAATGGGTGGTTCTTCTTTTGTTGGTAGGAATGTTATTGGTGCAGTGAGTAACGTGGTTGCACCGGGTTACCAGGTGGGGGAGGCTTCTGGTGGGTATGCTGGAAATGGTAAGAGGGATGGTGGTGGGGGGTTTCATCAGCAAGGAGTTTGCTTTGGAGGGAGTGGGTATGGGATGGGTCCCACAATGGGAATGGGCGGGCCTGTGAGTCCGGCCAATTCTTCTGATGGAATAGGGAATGATTGTGGGCAGTTTGGGCTTGATATGGGTGGTTTGAGAGGTAGAAAGAGGATCGGAGATGGTCCTGTGGAAAAGGTGGTGGAGAGGAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACGGTTGAATTAGAAGCGGAGCTAAACCAATTGAAAGAAGAGAACACCCAACTTAGACAGGCGCTGGCTGAGATCGAGAGGAGAAGAAAGCAACAGTGTTTTGAAGAATTAAACAATATAAGAGTTCAAACCAACGCTCAGAAAGTAAAAGAGAAACTGAGAGCTTTGAGAAGGAACATGAGTTATCCTTAG 1185 0.4835 MVVEESEMNSQGEVESRLQQDANKNHHSQFSPSSMGRQTSIYSLTLDEFQHTLCETGKNFGSMNMDEFLSSIWNAEENQAIITSSNLPLSQPFTDKEATTLRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQKEQQNNNVLNNTESAPRQPTFDEMTLEDFLVKAGVVREPPCAPPLLPHHSHHLQQQQQHYTNNNGAMPGMGGSSFVGRNVIGAVSNVVAPGYQVGEASGGYAGNGKRDGGGGFHQQGVCFGGSGYGMGPTMGMGGPVSPANSSDGIGNDCGQFGLDMGGLRGRKRIGDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLKEENTQLRQALAEIERRRKQQCFEELNNIRVQTNAQKVKEKLRALRRNMSYP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02179 394 SMART brlzneu 305 371 IPR004827 GO:0003700|GO:0006355
Phco2g02179 394 FunFam protein ABSCISIC ACID-INSENSITIVE 5 isoform X1 307 363 - -
Phco2g02179 394 CDD bZIP_plant_BZIP46 309 363 - -
Phco2g02179 394 Coils Coil 370 390 - -
Phco2g02179 394 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 35 364 IPR043452 GO:0003700|GO:0045893
Phco2g02179 394 SUPERFAMILY Leucine zipper domain 309 354 IPR046347 GO:0003700|GO:0006355
Phco2g02179 394 Pfam bZIP transcription factor 309 359 IPR004827 GO:0003700|GO:0006355
Phco2g02179 394 MobiDBLite consensus disorder prediction 1 36 - -
Phco2g02179 394 MobiDBLite consensus disorder prediction 12 36 - -
Phco2g02179 394 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 312 327 IPR004827 GO:0003700|GO:0006355
Phco2g02179 394 Coils Coil 325 362 - -
Phco2g02179 394 Gene3D - 307 358 - -
Phco2g02179 394 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 307 359 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02179 Phco-Chr2 52508377 52510964 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco2g02179 bZIP_1 9.1e-12 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02179 2 52508377 52510964 Phco2g02179 2 52508377 52510964 ECH
Phco2g02179 2 52508377 52510964 Phco6g00544 6 5308151 5311242 PCT