Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02164 ATGGGTTCATGCTCTGGCACTTCTGAAATAGTTGAAGCAGGGGAGGAGCTAAATACAAGGAAAGCTCCTGGGATTTATCAGTACAATTCTGAATGTAGCACGTCTGAGAAAAGTCACAAACTTTCGGCGCTGAAACTGGGCTACAAGGATAATCTAGACGATGATATTAATAAGCTGTTTGAATCAATTGCTGTTAAGTCTTCATCAAGGGATTTGGGTCTTTTACAAGACGGTACAAGTCCTAGACTGAAAAGTGCGTTAAAAAAGCCAATTACAATGGGTGTTCCTCGGTCTCCAAGAGTTGGGGCTTCTGGGCCTGTCAATTTGAAGCAAGCACTGAGAGACCTTTGCATATCTAAGGCATCCGAAATGGCCGCTATGAAGCGATTATCAAAGTCATCGGCTTCTCCAAGAATATCTGAAGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGCTGAAACCAGTCTATCTGGGCCTTCCTATGTTGAAAGCAAGGAGCGTCCAATTGAAGTAGCTCTTGTGCCAGGAAAAAGTAAGTCCCTTTCATCGGTGAAAACCTCACAATCCTATCAAACAGCCCAAATCGCATCGTCGAGCCGAAACATTCATTCGTCTCGGGAAATTGCTGTTGCTACTACTCAGTACGATTCTGGGACTTCATTGATACAAATTGATTTGGCATGCCCATCAAGTAAAGTTGGAATTCAATCACAACGAGTGGTACCTGTTGAAACAGAAGAACAAGCATCTGCCTCTTCATCTTCTCTTCGTAATACAATTGGAAGCAAACTAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTGGGTAATAAAGCATTTGTGTCAAATAACGGGAAGAAAGGTAGGTTGCAAACAGAATCTTCATCTACTTCTGTAAATGGCAACAGAGTTAACAAACTGCCACGCCATGCCCCCCGCACTGTTAAATCGGTCATCAAGAACAAGAATCTGACTAAGAAGAAACTAAAGGAGGATTCAGGTTCTGCTTTATGTGGTCCTATGCCCAATGAAGTTAAGAAGCCAGTTCCCGCTACGCCTCGGCTAATTTGTGAGAGATGTAGATGTGCTTTAGAAAATACGAGTGAAGAAAAAAACCAAGATGCTGCGGCATTGGACTCTACCAGTCCTGGAAATGGAGTAAGCTTGAATAACGTGCACTCTGGTTCAAATAAACCTGGTTTGGTGTCAACTGGCGGTAATAAAAGCAAAACAGTTGCAAAAGTCAAGAACTCCAAGTTGAAAGAGCAACTTGAATTTTCACAAAGTTCTAAAAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTAAGTGGCTCAAGTCGTAGCACTAGGCCTCACATGTCAAAAGATGTCAGATGGGAAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGAGCTTAACACACTTCAATCTCTTAAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCGGAACTAATTGGCACAAGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTGGAAAGGAGAAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATACTAAGGATCCTGGATCATCCTTTTCTTCCAACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTCATCATGGAGTATTGTCCAGGAGGAGATCTCCATGTTCTGCGGCAGAAGCAGCTTGGTAGATGTTTCTCAGAGCCGGCAGCAAGGTTCTATGTTGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCGGAAAACATTCTGGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCCGTTAACCCAACACTTCTGAAATCGTCTTCTGATGTCGACCCTGCAAAAATTTCTGGTCTGAGTGTGCAATCAAGTTGCATTGAACCATTCTGCATCGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTCCTACCTGCAGCTGCGAAAACAAGGAAATTAAAAGCTGATCCTTCGGCCCATGTCAGATCATTGCCACAGCTGGTGGCCGAGCCCACTGATGCAAGATCAAACTCCTTTGTTGGTACACATGAATACTTGGCTCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTCTATGAACTTTTGTATGGTAGAACACCCTTTAAAGGTTCTAACAATGAAGAAACATTGGCCAACGTAGTGATGCAGAGTCTCAGATTCCCTGACCACCCATTTGTTAGTTTCCAAGCAAAGGATCTGATTAGAGGGTTGTTGGTTAAGGAGCCTGAAAACCGTTTGGGTTCTGAGAAAGGGGCTGCTGAGATTAAACAGCATCCTTTCTTTGAAGGCCTTAACTGGGCCTTAATTCGTTGCGCTGTCCCTCCAGAACTTCCAGATTATTATGATTTTGGAGTTTCGGACATGATTAACTCGCAGGTTAAGGGTGCTAAGTACTTAGAGTGTAAAGTAGGAGAGCGTGTAGAATTCGAGTTGTTCTAA 2613 0.4302 MGSCSGTSEIVEAGEELNTRKAPGIYQYNSECSTSEKSHKLSALKLGYKDNLDDDINKLFESIAVKSSSRDLGLLQDGTSPRLKSALKKPITMGVPRSPRVGASGPVNLKQALRDLCISKASEMAAMKRLSKSSASPRISEVGKIQTLYNSVVAETSLSGPSYVESKERPIEVALVPGKSKSLSSVKTSQSYQTAQIASSSRNIHSSREIAVATTQYDSGTSLIQIDLACPSSKVGIQSQRVVPVETEEQASASSSSLRNTIGSKLEVPKNASSPKKLGNKAFVSNNGKKGRLQTESSSTSVNGNRVNKLPRHAPRTVKSVIKNKNLTKKKLKEDSGSALCGPMPNEVKKPVPATPRLICERCRCALENTSEEKNQDAAALDSTSPGNGVSLNNVHSGSNKPGLVSTGGNKSKTVAKVKNSKLKEQLEFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWEAIRHAQMQHGVLSLTHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLIMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPTLLKSSSDVDPAKISGLSVQSSCIEPFCIEPSCQVPCFSPRFLPAAAKTRKLKADPSAHVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVMQSLRFPDHPFVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAVPPELPDYYDFGVSDMINSQVKGAKYLECKVGERVEFELF 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02164 870 Gene3D Transferase(Phosphotransferase) domain 1 567 635 - -
Phco2g02164 870 FunFam Serine/threonine-protein kinase D6PK-like 485 570 - -
Phco2g02164 870 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Phco2g02164 870 SUPERFAMILY Protein kinase-like (PK-like) 461 845 IPR011009 -
Phco2g02164 870 FunFam serine/threonine-protein kinase D6PK-like 571 638 - -
Phco2g02164 870 MobiDBLite consensus disorder prediction 371 464 - -
Phco2g02164 870 ProSiteProfiles Protein kinase domain profile. 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02164 870 Gene3D Phosphorylase Kinase; domain 1 485 566 - -
Phco2g02164 870 FunFam serine/threonine-protein kinase D6PK-like 714 837 - -
Phco2g02164 870 Gene3D Transferase(Phosphotransferase) domain 1 712 828 - -
Phco2g02164 870 MobiDBLite consensus disorder prediction 245 310 - -
Phco2g02164 870 PANTHER FLIPPASE KINASE 1-RELATED 278 840 - -
Phco2g02164 870 CDD STKc_phototropin_like 485 837 - -
Phco2g02164 870 MobiDBLite consensus disorder prediction 372 416 - -
Phco2g02164 870 MobiDBLite consensus disorder prediction 245 268 - -
Phco2g02164 870 SMART serkin_6 487 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02164 870 Pfam Protein kinase domain 716 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02164 870 Pfam Protein kinase domain 488 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02164 870 MobiDBLite consensus disorder prediction 425 460 - -
Phco2g02164 870 MobiDBLite consensus disorder prediction 287 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02164 Phco-Chr2 52389094 52392688 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco2g02164 Pkinase 3.2e-35 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02164 2 52389094 52392688 Phco9g00997 9 8384229 8387207 ECH
Phco6g00623 6 6179284 6188620 Phco2g02164 2 52389094 52392688 ECH
Phco2g02164 2 52389094 52392688 Phco2g02164 2 52389094 52392688 ECH
Phco2g02164 2 52389094 52392688 Phco6g00623 6 6179284 6188620 PCT