Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02158 ATGGACTTGCATCTGAAGCAATGGAGAAACCAGCATGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAGCCACAAACACAATCATCTGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTACTAACAGATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAACTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTAGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGTCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTTTGCTGCAATCAGGGTACTGGGGTAGAGGAGCAATGGATCCAGAACCAGGGCGGTGCCGGAGAACTGACGGCAAAAAGTGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGTCACATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAAGTAGTGCTAATTGTGGTGGTAGTGGTGATGGTGCTGGATCTCAAGGACTTGGTGCTTCATCTTCCATTTCTTCACCGCCGCTAGCTACTGCTTCTCTGAAATCCCCTTTTGATCTTCTTCATCTTAGTGAACGCTCCTCTGGGACCAAGAATGAAGACAAGAGCTTGTTTGAAAACGAAGATCATGTGGGTGGGGATGGCAGAACAGGTGGGCATATGCTGAGACATTTTTTCGATGATTGGCCAAGATCACTGGAAGACTCTGACAACGTTGAAAACAATGCTCGCCGGATGAACTCGGCCACATGCCTCTCTATTTCTATGCCCGGAAATGCTTCCTCCTCCTCGGATGTATCATTGAAATTGTCCACGGGCTATGGAGAGGACCCGGGCCCAAGAAATGAGAATTTGAATCTCGAGGCTGAGCAACTGCAGTTGAATTGGGCCGGAGGGTGGGCCTCGGGTAGTCAAGTGGCTTCAATGGGTGGGCCACTTGCTGAGGCACTCAGATCATCTACTTCAACTTCATCTCCTACTAGCGTTTTGCATCACTTGCCTCCTGGTTCTTGA 1134 0.4929 MDLHLKQWRNQHESEEQHSTKMPKLLPESHQQPQTQSSASALPLFVPEPNSKVSTLSDSTLAATNRFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPSSANCGGSGDGAGSQGLGASSSISSPPLATASLKSPFDLLHLSERSSGTKNEDKSLFENEDHVGGDGRTGGHMLRHFFDDWPRSLEDSDNVENNARRMNSATCLSISMPGNASSSSDVSLKLSTGYGEDPGPRNENLNLEAEQLQLNWAGGWASGSQVASMGGPLAEALRSSTSTSSPTSVLHHLPPGS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02158 377 MobiDBLite consensus disorder prediction 233 256 - -
Phco2g02158 377 MobiDBLite consensus disorder prediction 183 212 - -
Phco2g02158 377 MobiDBLite consensus disorder prediction 355 371 - -
Phco2g02158 377 ProSiteProfiles WRC domain profile. 141 185 IPR014977 -
Phco2g02158 377 MobiDBLite consensus disorder prediction 295 310 - -
Phco2g02158 377 SMART QLQ_2 72 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco2g02158 377 Pfam QLQ 74 106 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco2g02158 377 MobiDBLite consensus disorder prediction 295 323 - -
Phco2g02158 377 MobiDBLite consensus disorder prediction 1 38 - -
Phco2g02158 377 MobiDBLite consensus disorder prediction 171 212 - -
Phco2g02158 377 ProSiteProfiles QLQ domain profile. 73 108 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco2g02158 377 PANTHER GROWTH-REGULATING FACTOR 5 32 302 IPR031137 GO:0005634|GO:0006351|GO:0032502
Phco2g02158 377 MobiDBLite consensus disorder prediction 232 256 - -
Phco2g02158 377 MobiDBLite consensus disorder prediction 1 23 - -
Phco2g02158 377 Pfam WRC 142 184 IPR014977 -
Phco2g02158 377 MobiDBLite consensus disorder prediction 24 38 - -
Phco2g02158 377 MobiDBLite consensus disorder prediction 343 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02158 Phco-Chr2 52304832 52307723 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Phco2g02158 WRC 2.3e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02158 2 52304832 52307723 Phco2g02158 2 52304832 52307723 ECH
Phco2g02158 2 52304832 52307723 Phco6g00621 6 6165220 6167969 PCT