Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02148 ATGGAAATGGAGGACCATCATCATCATCACCATCATCATCAACATCATGAGCAGCAGCAACAGCAGCACCAGCAGCAGTATGCCATCACTGATCTCAGGCAACTCATGAACGGCCCGAGGTCCACCCATTTCCCCTCCATGCCGCCGCAGCCCAAGGCGGAGCTCTTCCCCGGCGGCCACCCCAACCTGGCTGCCACGCAGCACTTCGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATGCCTCGGTGTCTTCATGACTTTGCCTCTACCGATTCCGCCACGAATAATAACAATACGAACATCGCTGCTGCCACTCCCACGACCACCACTAGTGCCTCCACTCCTCCGCTTAGTTGCTTAGAGGGTGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAGGGTCCCCTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGCGGGAAGAAGTGCCGGGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAGGAGGGAAAAGCAGGAAGACAGGATGGGAAACATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGGGAAAACAGTAACCAAACATCGGTGCCAGAAACCAATTTTGGTAGCAGCAGCCTTCGTTTCAACGCAAACAGCCACAACCCTTCTCAAACAAATCAAGAAATGTTTCACCCCCAGAAGCATTGTGATAGCCTAAGTCTCACCAACTCCACTGATTTGGACACGTCATCATCGGATGACAATGATCAGAATAGCACTGGGGGACTCAAGGACAATGACTCCACGGAGAAGAGGAGAAAGAGGCTGAGCGGTAGAAGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAAGAAAAGGAGAGGGTGTTCAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGTGAGGTTGGAGAGGGAACACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTTTAATGGAGGCTTTGCAAAAACTAACAGGAAATGAGATGATAAAGAGTACTCAATCTCCTGAGGGTCGTATGGTAACTGGAATTCAAAACCATAGTGAAAACCTGAATGAAGATGGGAGTGAAATACTAAATAGTACTACTGTCAGAGGTGCTGAAAGCTGGCCAGAATCTGAGATTACTAGGCTCCAACAACTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGATTATGTGGGAGGAAATAGCAACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTTTAGTGTTCAAAGAGAAATGGGAAAGTAGCAGCAACAATGCTAGGAATGCTAAAGATGGAAACAAAAAGCGCAAGGAAGACTCTAGAGGTTGTTTCTACTTCGATAACAGCGAACAGTCTTCTCTGTATAACCAAGGAGGGGCCTATTGTGATATTAATGATCAAAGGCACGAGAGGAGGCTGCAAAATGATGGTTCTTCGCCTTCGAATTCAAATGTTGGAAATGCAGTTGCTGGTGATAACTGTTTTCCCTTCTTGATGACTGAGAGTGCAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1779 0.4649 MEMEDHHHHHHHHQHHEQQQQQHQQQYAITDLRQLMNGPRSTHFPSMPPQPKAELFPGGHPNLAATQHFEMMMFGRQVADIMPRCLHDFASTDSATNNNNTNIAAATPTTTTSASTPPLSCLEGETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQTSVPETNFGSSSLRFNANSHNPSQTNQEMFHPQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGLKDNDSTEKRRKRLSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVFREEEWRRQEAVRLEREHKFWAKERAWIEARDAALMEALQKLTGNEMIKSTQSPEGRMVTGIQNHSENLNEDGSEILNSTTVRGAESWPESEITRLQQLRAEMETRYMQSGCSEEIMWEEIATKMACFGYERSALVFKEKWESSSNNARNAKDGNKKRKEDSRGCFYFDNSEQSSLYNQGGAYCDINDQRHERRLQNDGSSPSNSNVGNAVAGDNCFPFLMTESANLWENYSLKVNKASQNQ 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02148 592 MobiDBLite consensus disorder prediction 228 307 - -
Phco2g02148 592 ProSiteProfiles Myb-like domain profile. 131 196 IPR001005 -
Phco2g02148 592 MobiDBLite consensus disorder prediction 228 295 - -
Phco2g02148 592 CDD GT1 438 502 - -
Phco2g02148 592 Gene3D - 438 499 - -
Phco2g02148 592 Gene3D - 139 201 - -
Phco2g02148 592 CDD GT1 138 203 - -
Phco2g02148 592 PANTHER FI21293P1 62 551 - -
Phco2g02148 592 SMART sant 135 198 IPR001005 -
Phco2g02148 592 SMART sant 434 497 IPR001005 -
Phco2g02148 592 FunFam Trihelix transcription factor GT-2 438 500 - -
Phco2g02148 592 Pfam Myb/SANT-like DNA-binding domain 437 520 IPR044822 -
Phco2g02148 592 Pfam Myb/SANT-like DNA-binding domain 138 224 IPR044822 -
Phco2g02148 592 MobiDBLite consensus disorder prediction 1 25 - -
Phco2g02148 592 FunFam trihelix transcription factor PTL-like 139 201 - -
Phco2g02148 592 Coils Coil 328 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02148 Phco-Chr2 52196131 52198728 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco2g02148 Myb_DNA-bind_4 3.4e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02148 2 52196131 52198728 Phco2g02148 2 52196131 52198728 ECH
Phco2g02148 2 52196131 52198728 Phco6g00615 6 6061253 6064180 PCT