Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02144 ATGAATATGGAGAGCACGCGCAGATCGTTGGATAGATCGAGAGAGCCGGGTCCCAAGAAGCCTCGATTGATCGAGGAACTCAGTGCCCGACAGTTATCTCAACGACAGCAAGGGTCTGGGGCAGTTGCTTCGGGGGTGTCTGCGAGGGTCAGGGTAAATGACAGGGACTCCGAAAGCAGCGATTCAGGTCGCGGCGGTGGGTACCACCCGCAATCTCCCCCTCACAATGAGCTTGTGGCTCAGTATAGGACCGCGCTTGCTGAGCTTACTTTCAATTCGAAGCCGATAATTACGAACTTGACTATTATTGCCGGGGAGAACCAGTCTGCTGCCAAGGCAATTGCCGCCACTGTTTGTGCTAACATTATAGAGGTTCCAAGTGATCAAAAACTGCCATCTCTTTATCTCCTAGACAGTATTGTTAAGAACATCGGGCGGGATTATATAAAATATTTTGCTGTCAGACTACCTGAGGTATTCTGTAAGGCTTACAGACAGGTTGATCCTATTGTCCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTGCCTTCAGATGATTGAGAAGGAACTTGGCTTTACACCTGCAGTCAATGGTTCAGCTTCGGTATCTGCTACAGTCAGGAGTGATTTTCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAACAGTCAAGTACGAGTAAAGGAGTTGTTGATGACATGACTGGAGCTTTGTTAAACTCAAATGAGGATTCAGAGAGGCCAGAGAGAGCTTTGGGTGCTTCGCGACCATGGCTGGATCCTAGGATTAACATGCTTAATAACCAGCACGCACACAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGCATTGATGGATCATTTGGAGGCAGTCAATATGGTTCTGGCATTTCTAGTAATTTGGTCTCAGGAGCTGGAAGAACTGGAACTAAGCTCATTGATTTAGGGCACGAAAAAACATGGTTCAAAACAGATGGTGGTGATGCAGAGACCATATCTGGGCAAAAAAATGGTTTCAGTCTCAAGCGTAGTCTTTCAAATCGTGAAGCACCAAAGTCCATAAATTTGGAAGCACATCGTCAGCCAAGAGAAAGTATAACTAACATACGAAACAATGTGATGTCAGGTAACTGGAAAAATTCTGAAGAGGAGGAGTTCACGTGGGATGAGATGAACACTGGCTTGACTGATCATGGACCCAATGTGTCCAGCAATTTGAGCACAGATTCATGGATGACAGATGATGAAAATTTGGAAGGTGAAGATCACCTGCATATTCTACGCCCTTATGGGGCAAAGGTTGATAGGGAAATATCCACTGTTAAGAAACAACTGCCTGGTTTTGGTGGCCATCCACCTTCATCATGGCAATTGCAGAAGCACCACTCAATTGATAAGTTGAATCTGAAGCCAGGTTACTCAGATGGATTTGTGTCCACTATTAGTGGCTTACCAGCCAACGCAAATTCTTTACCTGTCAAGAAGGGGAACCAATCTTTTACGTCAAAGGCACTAGTAGGAATGGCCAAAATTGTAGGGCAGCAATTTGATGGGGAGATCGAATCCCCTTCTGGGCAATCACCTTTGCAACGACGGTCTCCATCACTGCCAGGAACAGCATACCACCCTCATTCAATGCAAAATTTGCCCGAGCAAGAAATGCCCCAGAATATCAGAACATCTCAATTTCTGGGAGGTCCAACAAGTCAGCACATTAGAGATCGCTCACCTACCCTTCATCCCATTGTTCAGGTTGGTAACATGCGGAGAACACAGGAAAAGGACATGCAGGGCCCATTATCTTCTGCAACTATTCAACCAAAGCTTCAGCAACAGCAGCTTGACTCTTCTCAGATTGAAGTTTCTGCTAAAACTAAGCTGCTCCAGTCTAAAGCTTCTTTAACCAAAGAAGTTTCAGAACAGTCAACCAAAAATAATTTGTCATCTGCAGCAGTGAAGAGTGGAATCATCCCCAAGAAATCAATTACCAGTAATCTGGATCCAAGGAAGCATCTATCCAAGTCTGGGGTTCAGCTTCCTCGATCTGGTAGGTCTTCTCCTACCACAATAATTTCTTCAGGGTCTGCAGTGGCATCAGCATCTTTCTTAGATCCTCGGCATAAAGATTCGTCTTCAGTGCCAAAAAAACCTCAAGGAAAGGCTGGACAACCACCACAGAAGCTTTCTACTCAACCACCTGCTTCTTCTAATTTGAATGCTGCCAAAAATAATGTAAATCCTATCGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCGACTATGGTACCAAGCGAACCAAGCAAAGTGCTGAAGGGATCCAAAGATAAAACTGCAAACATTAGCACCAGTAGCTCTTTCCCAGTTACATCAGTTTCTGATTCTGCAGCCGTCCCTGTATCATCTGCCAGAGATGAGGTTGATGCCGCAACGAAATCCTCTCTTCCCTCAGCTCAATCTACTAGCACAAAAATCAGAAATCTCATTGGCTTTGATTTTAAACCTAATCTAATTCGAGAATTCCATGAACCGGTAATTAGGGAATTATTCGATGATTTTCCTCATCATTGCAAAATTTGCGGTATTAGGTTTAAACAAGAAGAACAGTATCAGAGACACTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAAGTATCCAGAAGTTGGTATCCTAAGTCAGGTGATTGGATTGCTGGCAAGGTAGAAGAATATTCATCTGAGTTTGAGTTTGCTGACTCTGTTGTAGACAACCAAGAAACAGACAGCAGTCTATTGGATATGATGATTAGAGCAGATGAAAATCAGTGTTTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCAAGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTATATAAACTACTCGGATATCAATAGTGAGATGGAAAGTAGAAATGCGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATTGTCACCAATTTGGATAATGATTAA 3087 0.4376 MNMESTRRSLDRSREPGPKKPRLIEELSARQLSQRQQGSGAVASGVSARVRVNDRDSESSDSGRGGGYHPQSPPHNELVAQYRTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFGTWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDFQSQRPPHSIHVNPKYLERQRLQQSSTSKGVVDDMTGALLNSNEDSERPERALGASRPWLDPRINMLNNQHAHRDAFNDSVPEKSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGHEKTWFKTDGGDAETISGQKNGFSLKRSLSNREAPKSINLEAHRQPRESITNIRNNVMSGNWKNSEEEEFTWDEMNTGLTDHGPNVSSNLSTDSWMTDDENLEGEDHLHILRPYGAKVDREISTVKKQLPGFGGHPPSSWQLQKHHSIDKLNLKPGYSDGFVSTISGLPANANSLPVKKGNQSFTSKALVGMAKIVGQQFDGEIESPSGQSPLQRRSPSLPGTAYHPHSMQNLPEQEMPQNIRTSQFLGGPTSQHIRDRSPTLHPIVQVGNMRRTQEKDMQGPLSSATIQPKLQQQQLDSSQIEVSAKTKLLQSKASLTKEVSEQSTKNNLSSAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPRSGRSSPTTIISSGSAVASASFLDPRHKDSSSVPKKPQGKAGQPPQKLSTQPPASSNLNAAKNNVNPIANLLSSLVAKGLISAETESPTMVPSEPSKVLKGSKDKTANISTSSSFPVTSVSDSAAVPVSSARDEVDAATKSSLPSAQSTSTKIRNLIGFDFKPNLIREFHEPVIRELFDDFPHHCKICGIRFKQEEQYQRHLEWHATREHGPIKVSRSWYPKSGDWIAGKVEEYSSEFEFADSVVDNQETDSSLLDMMIRADENQCLCVLCGELFEDVYCQERNEWMFKGAVYINYSDINSEMESRNAGPIIHAKCLSENSIVTNLDND 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02144 1028 Gene3D - 70 199 IPR008942 -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 537 566 - -
Phco2g02144 1028 ProSiteProfiles Zinc finger C2H2 type domain profile. 882 909 IPR013087 -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 29 43 - -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 697 718 - -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 538 566 - -
Phco2g02144 1028 Pfam CID domain 84 192 IPR006569 -
Phco2g02144 1028 CDD CID_Pcf11 79 189 IPR047415 -
Phco2g02144 1028 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 1 26 - -
Phco2g02144 1028 SUPERFAMILY ENTH/VHS domain 74 202 IPR008942 -
Phco2g02144 1028 ProSitePatterns Zinc finger C2H2 type domain signature. 884 904 IPR013087 -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 579 601 - -
Phco2g02144 1028 SMART 558neu5 77 199 IPR006569 -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 1 75 - -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 742 760 - -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 579 594 - -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 784 815 - -
Phco2g02144 1028 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 43 1019 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Phco2g02144 1028 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Phco2g02144 1028 MobiDBLite consensus disorder prediction 680 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02144 Phco-Chr2 52160906 52166584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g02144 CID 3.5e-12 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02144 2 52160906 52166584 Phco2g02144 2 52160906 52166584 ECH
Phco2g02144 2 52160906 52166584 Phco6g00610 6 6030452 6036942 PCT