Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02135 ATGTCTTCAGACACAAAGAAAAGTCGTGGTCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGTACCGGACTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGCTGCTGACGTGGCACTTGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCATTCGGTCACCCTAACGTCGACGCCGTGATTGACAGCTACCTCGCACGTCCCTCACCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCACCGCCTGGCCAACGTGCGTGACCTCAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGCGGGGAGGCAGCGCGGGGAGGAGCTGAATGGCATGAAGAAGGACTCCCAGGCCCAGTTATGGTGGGCTCAGCCCATCGAGAAAATGAGCCCAGCCCAGATGGAGCAGTACAAGGCGTCCTTGGAGGAGCTGAAGAAACTGGTTGCGCGTATTGCTGAGAGGGCCATGCTTGAGAGTGCAACAAACCAGACTTGTCAGTTTTTTCCTGGGGCTCCTTCCTCTTCCAACTCTTCCAATCTGCTACGTCACCCACACCCTCCTCAGGTGTTCCCACAACCGCTGATTCAGCCACCCATGCTTCAGAACTTCATGTTTCCTGATGGGAGCATCGTAAGCCACCATGGGTTTAATCACATGGAAGTGGGAGGATATGCACCTGGACCTGCTGGTGTTTTCTTTTGA 747 0.5448 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDSYLARPSPQDMGTMQFIEAHRLANVRDLNAQLTQINAQLEAGRQRGEELNGMKKDSQAQLWWAQPIEKMSPAQMEQYKASLEELKKLVARIAERAMLESATNQTCQFFPGAPSSSNSSNLLRHPHPPQVFPQPLIQPPMLQNFMFPDGSIVSHHGFNHMEVGGYAPGPAGVFF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02135 248 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Phco2g02135 248 Coils Coil 149 169 - -
Phco2g02135 248 MobiDBLite consensus disorder prediction 1 22 - -
Phco2g02135 248 Coils Coil 100 120 - -
Phco2g02135 248 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Phco2g02135 248 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Phco2g02135 248 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Phco2g02135 248 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Phco2g02135 248 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Phco2g02135 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Phco2g02135 248 Gene3D - 89 182 - -
Phco2g02135 248 MobiDBLite consensus disorder prediction 1 18 - -
Phco2g02135 248 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Phco2g02135 248 PANTHER MADS BOX PROTEIN 11 164 - -
Phco2g02135 248 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Phco2g02135 248 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02135 Phco-Chr2 52089827 52090573 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco2g02135 SRF-TF 1.1e-23 No_clan