Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02121 ATGAAACACCCTTCTTCCATAAACCTGTCACTGGCATTGGCCTTCACCATCCTTTATGTTGCAGAGACTGCATGGCAAAATGATTCACTCGCCCTAACCCAATTCCGCCTCCAAACCGACACCCATGGCAACCTCCTCTCCAACTGGACTGGAGCCGACGCTTGCTCCGGCGCGTGGCTCGGAGTGGAGTGCTCCCCAAATGGCAGAGTAGTGGGCCTCTCCCTCCCCTCCCTTAACCTCCGTGGCCCGATTGATTCTCTTTCCCCACTTCTCTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGTACCTTATCCCCTCTCTTAAACTGCACTGCTCTCGAACTTCTCTACCTCTCCCACAATGACTTCTCCGGCGATATTCCGCCGCAGATATCTTCCCTCCGCCTCCTCCTCCGCCTTGACATCTCCGATAACAACATCCGCGGTCCAATCCCCAACCAAGTCGCCAAACTAACCCACCTCCTCACTCTTCGGTTACAGAACAACGCCCTCTCCGGTCACGTCCCCGACCTCTCCGCTTCCCTCCTCAACCTCACCCAACTCAACGTAACCAACAATGAACTTCGTGGCCACGTTCCCGATTCCATGCTCGCCAAATTCGGCAACGCCAGCTTCTCCGGAAACCACGCTCTATGTGGGTCCACCCCGTTGCCTAAATGTTCCGAAACCGAACCAGACACGGAGACCACAATAACCGTTCCTTCAAAACCGAGCTCATTCCCTCAAACAAGTAGTGTCACTCTCTCTAACACTCCGAAGAAGAAAGGGCTGAGGGCGGGTGTCATTGTTGCGATTGTGGTGGCGGTACTGGTGGCGGTGCTGGTGGCGATGTCATTCGTGGTGGCGCACTGCTGCGCGAGGGGAGGGGAAGGCTATGGGTCGGCGGTGGGGAGCGAGAGTGGGAAGAGGAAGAGTGGGAGTAGTTCTGGAAGCGAGAAGAAGGTGTATGGAAATGGTGGGAACTTCGACAGAGATAGCGATGGGACGAACACTGAGACGGAACGAAGCAAGCTGGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCATCGGCAGAGATGCTGGGAAAAGGATGCTTGGGAACGGTTTACAGAGCGGTGCTCGACGATGGGTGCACCGTGGCAGTGAAGAGACTCAAAGACGCAAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGACGTTGTAGGGAAGCTGAAACACCCCAACATTGTTAAACTCCGAGCTTATTACTATGCCAAGGAAGAAAAGCTTCTTGTGTATGATTACCTCCCCAATGGAAGCCTGCATGCTCTTCTTCATGGTAACCGTGGACCTGGAAGGATTCCATTGGACTGGACAACGAGAATAAGCTTGGTGTTAGGTGCGGCTAGAGGGTTGGCCAGGATTCATGCAGAGTACAACGCGTCCAAGATACCTCACGGGAACGTCAAATCCTCCAACGTGCTTCTCGACAAAAACGGAGTCGCTTTGATCTCCGACTTCGGGTTATCTCTGCTGTTGAACCCGGTTCACGCGATCGCGCGTTTGGGAGGGTACAGAGCGCCGGAACAGGTTGAAGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGCTTTCGGGGTGTTGGTGTTGGAGGTGTTGACAGGGAGGTCACCGTCGACACCGTACCCTAGTTCCGCAGCTCGTCCGCGCGTGGAGGATGAGAGTGAGGTGGATCTTCCGAAGTGGGTTGGGTCGGTGGTGAAGGAGGAGTGGACTGCTGAGGTGTTCGACGAGGAGCTGTTGCGGTACAAGAACATCGAGGAGGAGTTGGTAGCGATGTTGCATGTGGGAGTGGCGTGCGTGGCGGCGCAACCGGAGAAGAGGCCGAGTATGTTGGAGGTTGTGAAGATGGTTGAGGATCTGAGGGTGGAACAGTCTCCCCTGGGAGAGGATTATGATGAGGCACGGTCACGCAATTCGCTTTCACCGTCGCTTTCCACCACCGAAGATGGCCTTGCTTAA 2034 0.5492 MKHPSSINLSLALAFTILYVAETAWQNDSLALTQFRLQTDTHGNLLSNWTGADACSGAWLGVECSPNGRVVGLSLPSLNLRGPIDSLSPLLYLRFLDLHENRLNGTLSPLLNCTALELLYLSHNDFSGDIPPQISSLRLLLRLDISDNNIRGPIPNQVAKLTHLLTLRLQNNALSGHVPDLSASLLNLTQLNVTNNELRGHVPDSMLAKFGNASFSGNHALCGSTPLPKCSETEPDTETTITVPSKPSSFPQTSSVTLSNTPKKKGLRAGVIVAIVVAVLVAVLVAMSFVVAHCCARGGEGYGSAVGSESGKRKSGSSSGSEKKVYGNGGNFDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGCLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLKHPNIVKLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHAEYNASKIPHGNVKSSNVLLDKNGVALISDFGLSLLLNPVHAIARLGGYRAPEQVEVKRLSQEADVYAFGVLVLEVLTGRSPSTPYPSSAARPRVEDESEVDLPKWVGSVVKEEWTAEVFDEELLRYKNIEEELVAMLHVGVACVAAQPEKRPSMLEVVKMVEDLRVEQSPLGEDYDEARSRNSLSPSLSTTEDGLA 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02121 677 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 647 IPR046959 -
Phco2g02121 677 MobiDBLite consensus disorder prediction 301 340 - -
Phco2g02121 677 Gene3D Transferase(Phosphotransferase) domain 1 440 663 - -
Phco2g02121 677 CDD STKc_IRAK 370 645 - -
Phco2g02121 677 MobiDBLite consensus disorder prediction 231 262 - -
Phco2g02121 677 Gene3D Phosphorylase Kinase; domain 1 334 439 - -
Phco2g02121 677 SUPERFAMILY L domain-like 27 206 - -
Phco2g02121 677 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Phco2g02121 677 MobiDBLite consensus disorder prediction 650 677 - -
Phco2g02121 677 ProSiteProfiles Protein kinase domain profile. 364 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02121 677 MobiDBLite consensus disorder prediction 662 677 - -
Phco2g02121 677 SUPERFAMILY Protein kinase-like (PK-like) 368 642 IPR011009 -
Phco2g02121 677 Gene3D Ribonuclease Inhibitor 22 88 IPR032675 -
Phco2g02121 677 Gene3D Ribonuclease Inhibitor 89 238 IPR032675 -
Phco2g02121 677 MobiDBLite consensus disorder prediction 310 325 - -
Phco2g02121 677 Pfam Protein kinase domain 368 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02121 677 FunFam Nuclear pore complex protein NUP107 25 180 - -
Phco2g02121 677 FunFam pollen receptor-like kinase 1 334 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02121 Phco-Chr2 51981756 51983862 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco2g02121 Pkinase 3.1e-33 CL0016