Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02117 ATGAATACAGAAACAGGAAAACAAACTTCGCTAACACTTGCCTTGGCTGGTCTGTTCCGTCTGGAACTTAATTGTGATGCTGTAGTAGATTTTCCTCTCGTATTATTGTGCCTTCCATCAGGTTCTTCTGCTACATATTTTTGTCACTGTTTCATAACATTAGATCTCTACGCGTTGTGGTATGAGGCGAAGTTAACAAATATAAGTACCCACGCACTGGTCCATGCCCTTATGTTCGGCGCCGTTTACGTAGAGTCACATACCTTTTGCTTCTGTTTCAATCTTTCAGAACTATTTCTTAGGCAGGTGTTCATCGACTTCTTCATCAGGCATATACTGGACCACTCCCAACATGTCCACCAAGCTCTTATAGTCTCTACCTATCTTCTAGCTATACCTAGAACGATCGTGCAACACCTCACTGCCTTAGCTATACACTCTCTGCCTGTGTGGTCCCACTCCATTCTCATCCACTCAACCATCAAGCCATATAAGAGATCAAATTTGCAGATGGATTTCAATGGAAGAGATCTTCAAAGAAAGGTGGAAAACGATATGGATTGGCACTGCACCACAAAACCATTTCTTCCTCAGCCAGAGACCTTAAGCTTCTTCTACAACTATAACAACAACCCATATCCAGGAGTGGAAGTGAAACAAGCGACATTGTTGGAGACAGGAGAAAGGTCGAATCCGGCAATGGACAACAGAAGCAATAAAGAGAAGAAGAAGCGGTTAACAAGCAAGCAGATAGAGTTATTGGAGAGGAGCTTCCAGGAGGAAATAAAGTTAGACCCTGAAAGGAAGATGAAGCTTTCGAGGGAGCTATGCCTTCAGCCACGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAAACCAAGCAGCTTGAGCACCTGTACGATGTTCTCAAACACCAATATGATGTCATCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGCAAAGAGCAAGGTTTTGGGATGCAAACATTGGGCGGTTATTCAGAAATATCTGGAGAAGAAACGGTAGAAAGCACGTCGGAGGGTCTAAGGGGTTCTAATAACAAGGCATGGGGAAAGAGTAACATTGAGCAGGTTGCAGATGAGGGCCTTTGTTCTTTGAGCGTGGAGGATTATAACACTGTTTCACTGCCTCTCTGCCACTGGCCTGTTGTGCCTTATTAG 1218 0.4384 MNTETGKQTSLTLALAGLFRLELNCDAVVDFPLVLLCLPSGSSATYFCHCFITLDLYALWYEAKLTNISTHALVHALMFGAVYVESHTFCFCFNLSELFLRQVFIDFFIRHILDHSQHVHQALIVSTYLLAIPRTIVQHLTALAIHSLPVWSHSILIHSTIKPYKRSNLQMDFNGRDLQRKVENDMDWHCTTKPFLPQPETLSFFYNYNNNPYPGVEVKQATLLETGERSNPAMDNRSNKEKKKRLTSKQIELLERSFQEEIKLDPERKMKLSRELCLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAMLSKEQGFGMQTLGGYSEISGEETVESTSEGLRGSNNKAWGKSNIEQVADEGLCSLSVEDYNTVSLPLCHWPVVPY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02117 405 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 234 351 IPR045224 GO:0003700
Phco2g02117 405 FunFam Putative homeobox-leucine zipper protein ATHB-51 239 302 - -
Phco2g02117 405 Coils Coil 303 330 - -
Phco2g02117 405 MobiDBLite consensus disorder prediction 226 246 - -
Phco2g02117 405 Pfam Homeodomain 240 295 IPR001356 GO:0003677
Phco2g02117 405 Gene3D - 206 298 - -
Phco2g02117 405 SUPERFAMILY Homeodomain-like 230 299 IPR009057 -
Phco2g02117 405 ProSiteProfiles 'Homeobox' domain profile. 237 297 IPR001356 GO:0003677
Phco2g02117 405 SMART HOX_1 239 301 IPR001356 GO:0003677
Phco2g02117 405 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Phco2g02117 405 Pfam Homeobox associated leucine zipper 297 331 IPR003106 GO:0006355|GO:0043565
Phco2g02117 405 CDD homeodomain 240 298 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02117 Phco-Chr2 51944674 51954175 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco2g02117 Homeodomain 6.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02117 2 51944674 51954175 Phco2g02117 2 51944674 51954175 ECH
Phco6g00592 6 5830612 5833903 Phco2g02117 2 51944674 51954175 PCT