Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02074 ATGTGTGTGGTTCCAGGCTTGCAAACCAATCCTCCAGAAAGGAATCGTTGCGAAAAAAGTAATGGGTTTGCTTCAAAGCCAACCGAATCTCACTCGTTTCCTACCCTCTTCATACTTAACATTGCATCTTTTTTTCTCCCTCTCTCTACACTTCACATCTGTAATATAAGACTTCCAAGTTTGGGAACGCAACAACTCTTGCAAACCCAAAACACGTTACTATTACTATTAGAGGTACCTTCTTCCCTCTACCATTCCCACTCTCTTCATTGCTCTTCCTCCATTCATCACTCATTCTCCTTCTCTCTCTCCCTCACCATGCAAATGCAAGAGGAGCACATACAAATCATCAAGGGCAAGCGCACAAAGCGTCAAAGGCTACCATCGCCGCTTAGGTTAACCATGTCAACATGTTCCACCGCAGGACGAAGCAGCAACGACAATTCCGCAGGTTTTGATCCTCTAACAACCTCAAATGAATTAAGGAACCAAGAGGATGAAGACTTGGCCAATTGTTTAATTCTCTTGGCTCAAGGCCATAACACTCCAAAACCCTCACACAACAAGGAATCGGGGCTGTATGTTTACGAGTGCAAGACTTGTAATCGATGCTTCCCTTCGTTTCAAGCCCTTGGGGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTAGTGCAGAAGAAAAGCAAGGACCAGTTACTACTTTTGGGGATAATAATAGTAATAATAATCATGATGATTATTGTGTCCCCACAAGCACCACCCTCACCTTACAATTATCAACGTTTTTGTATAATAGCAGCAACAGCAGTAGGAGTAGTACTATTAATGCTAAACCTAAGGGTCATGAGTGTTCCGTATGCGGGTCAGAGTTCTCATCTGGGCAAGCCTTGGGGGGACACATGAGAAGGCACAGAAATTTTGTGAGTGCACCTACAAGTGGGACAATTGCATATGGTGGTGATGGAAGCCCTGAAATTCCAGAAACCAAGAAACACAGAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACAGAGAATCCAAGTTGTTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTTTTCTCTGCAACTTCTTTGTTGGATTGCCATTACTAA 1137 0.4362 MCVVPGLQTNPPERNRCEKSNGFASKPTESHSFPTLFILNIASFFLPLSTLHICNIRLPSLGTQQLLQTQNTLLLLLEVPSSLYHSHSLHCSSSIHHSFSFSLSLTMQMQEEHIQIIKGKRTKRQRLPSPLRLTMSTCSTAGRSSNDNSAGFDPLTTSNELRNQEDEDLANCLILLAQGHNTPKPSHNKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKASAEEKQGPVTTFGDNNSNNNHDDYCVPTSTTLTLQLSTFLYNSSNSSRSSTINAKPKGHECSVCGSEFSSGQALGGHMRRHRNFVSAPTSGTIAYGGDGSPEIPETKKHRDVLNLDLNLPAPEDDHHRESKLFPFQSKEKVIVFSATSLLDCHY 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02074 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 283 305 IPR013087 -
Phco2g02074 378 Gene3D Classic Zinc Finger 193 305 - -
Phco2g02074 378 SUPERFAMILY beta-beta-alpha zinc fingers 195 305 IPR036236 -
Phco2g02074 378 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Phco2g02074 378 PANTHER ZINC FINGER PROTEIN ZAT5 158 357 - -
Phco2g02074 378 MobiDBLite consensus disorder prediction 1 26 - -
Phco2g02074 378 MobiDBLite consensus disorder prediction 228 244 - -
Phco2g02074 378 MobiDBLite consensus disorder prediction 138 158 - -
Phco2g02074 378 Pfam C2H2-type zinc finger 195 219 - -
Phco2g02074 378 Pfam C2H2-type zinc finger 283 306 - -
Phco2g02074 378 ProSitePatterns Zinc finger C2H2 type domain signature. 285 305 IPR013087 -
Phco2g02074 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 218 IPR013087 -
Phco2g02074 378 MobiDBLite consensus disorder prediction 223 244 - -
Phco2g02074 378 SMART c2h2final6 196 218 IPR013087 -
Phco2g02074 378 SMART c2h2final6 283 305 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02074 Phco-Chr2 51495436 51496572 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g02074 zf-C2H2_6 1.7e-10 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02074 2 51495436 51496572 Phco9g00952 9 7750179 7751093 ECH
Phco2g02074 2 51495436 51496572 Phco2g02074 2 51495436 51496572 ECH
Phco6g00705 6 7022500 7023291 Phco2g02074 2 51495436 51496572 ECH
Phco10g01468 10 37342753 37343667 Phco2g02074 2 51495436 51496572 ECH
Phco2g02074 2 51495436 51496572 Phco10g01468 10 37342753 37343667 ECH
Phco2g02074 2 51495436 51496572 Phco6g00705 6 7022500 7023291 PCT