Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02052 ATGGGTAGAGCTCCTTGTTGTGACAAGGCCAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGAGCAACATGGCACCGGAGGGAATTGGATTGCCCTCCCACAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGATTAAGGTGGCTTAATTACCTAAGACCCAATATTAAGCATGGTCAATTTTCTGATGCAGAAGATGAAGTAATCTGTAGCCTCTTTTCTAGCATTGGAAGCAGGTGGTCCATAATTGCATCTCAGCTGCCAGGGAGAACTGACAATGACATCAAGAACTATTGGAACACCAGGCTTAAGAAGAAAATGATGGCCATGAATCCTTCTCCCCAGAGGAAACCTCGTCGAATTACCCTTTTATCCATCCTTGAAAGCTCAACACCATCTTCATCACCATTATCATTCAGAGACAACAGCAACTCATACTACCATCCCCACGGTTCTTTCACAGGCGTTGGCTCCTTTTCCTACACTTCAAGTCTTCTGAGTGGAAACAACTCTTCTGCTTCTGCTGATTCCTTCTTTCAAGCACAAGAGAGTTTCATGAACCCCACTCAGAAGTGCCAATTCAAAGATAGCAGCAACAATAGTATGTTTGTGTTCGGTGGTGAAGCCACAGCCACTAGTTGCAGCTCTTCTGATGCGAGCTGCAACAACCAGATCAGTCAAGTCATGGAGCCAGAATTTGGTGAGGCAAGTTTTGTGGAGCAGATAGGTGTTGCTGATAATCACCTCTACAGTGGGGTGGAAAATACTACTCACAAGTTTATGATGTTCTCCAGTAGCAGTGCTAGTACTGTTAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCATTGGATTATGGTCTAGAGGAAATTAAACAGCTAATTAGCACTACTAACAATTGCAACAACTTTTTGTTTGATGATAAGAAGACAGAAGAAAGGGTCACGTATTACTGA 996 0.4307 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDEVICSLFSSIGSRWSIIASQLPGRTDNDIKNYWNTRLKKKMMAMNPSPQRKPRRITLLSILESSTPSSSPLSFRDNSNSYYHPHGSFTGVGSFSYTSSLLSGNNSSASADSFFQAQESFMNPTQKCQFKDSSNNSMFVFGGEATATSCSSSDASCNNQISQVMEPEFGEASFVEQIGVADNHLYSGVENTTHKFMMFSSSSASTVSGWTDKQNGLWEQNPLDYGLEEIKQLISTTNNCNNFLFDDKKTEERVTYY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02052 331 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Phco2g02052 331 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Phco2g02052 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Phco2g02052 331 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Phco2g02052 331 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Phco2g02052 331 CDD SANT 16 62 IPR001005 -
Phco2g02052 331 Gene3D - 69 132 - -
Phco2g02052 331 Gene3D - 7 68 - -
Phco2g02052 331 SMART sant 67 115 IPR001005 -
Phco2g02052 331 SMART sant 13 64 IPR001005 -
Phco2g02052 331 PANTHER OS09G0431300 PROTEIN 1 307 - -
Phco2g02052 331 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco2g02052 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Phco2g02052 331 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02052 Phco-Chr2 51266317 51267759 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco2g02052 Myb_DNA-binding 5.7e-15 CL0123