Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02035 ATGAAAGATACTTCGACCGAGAACCATACTGCTGTCTATGACGTGAGCGATCAGACTCTTGTTATGGATGAAGAAGGAGGGGATGCCCGTTCTAAGTGCATTGAGGGATTGGCTAAAGAGTATACAAATAATACACAAGCAAATTCTCATGTGAAAGATAAAAACCGGGGCAAGGACGTTGTATGTTCCAATTGCTTGGGTGGTGGAGTACTTTTATGTTGCTCTGGAAAAGGATGCCAGAAGAGGTACCATCCCTCATGTGTGTATCCTCCTCTCAAATACATTCCTTTGAGGTTTTGGCATTGTATCTGGTGCACTAAGAAAAAAATAGAGTTTGGCGTGCATTCGGTTTCTGAAGGAGTGAAATCCATCTTGGATTCTAGAGAAGTGGTTTCGAATAATAAAGTGATGCAAAGGGAGTACTTTGTCAAGTATCAAGGTCTCGCTCATGCTCACAACCGCTGGATTACAGAATCAATAATGCTTCTTGAGGCTCCTAAACTCTTGGCCAAGTTTAAGAGTAAACTGCAGGTTCAGTTACCCTTCATATTCTTTGGAACACCAATGGTTACAAGGTGGAAAAGAATTTGGAGTATACCTCATCGCTTACTGCTTAAAAGAGAAATTGTGCATTTTGATGGCCATGGTGACAATGATTCAATTTGCTGTTATGAGTGGCTTGTCAAATGGACTGGTCTTGGTTATGATAATGCTACATGGGAGTTACAAGATGCTTCATTTTTGACATCAGCCAAAGGCAGGAAACTTATACATGACTATGAAAGTCGTCGAAAGAGAGTTGATGAACTGTCAAAAAGTCATTTTGAAGACAATGAGGAGAGAGAAACTTTCGTTGCTGAATTATCAGTTTTGCCATTTGGATATTCACGAGGACTCTATAACCAGTATTTGAGTTATGTGAACAAGCTTCGTATGTGTTGGCACAAAGGCCAAAATGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGCATTATAAAGGTGATTTTGTTTGTATTATCTTTGAATTGTAATAGCAAGAGGCCTTTTCTCATCATCTCAACTTCCACTGCCCTCTCTGTATGGGAAACAGAGTTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACAAGGGAAACAGAGATATACGGAGTGGCATCAGGGCATTAGAGTTTTTTAATGAAGAAAATGGTGTATTATTTCAAATACTGTTGTCATCTTCTGATGTTGTTGTTAAGGACTTACATGAACTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCAGCAATCCAGAATTTCAGGACACTTGGACAGTATCAAGATTCTAAAAACTGAAATGAAGCTCCTTCTTGTTAGTGGACAAATAAAGGAAGATCGATCTGATTATATCAAACTGCTTTCATTCCTCGACTCTGCACATCATGGGTCAAGTATTACTCCAATAGAAAATTCTTTCAATGCTAGCATTTCTAATTTGAAGAGCCAATTGGAAAAATATGTTGTATTCAAATGCAAATTAGGCTCTACTAGGTTTGTAGAGTATTGGGTTCCTGCCTGTCTTTCTCATTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTTAATGTTGTTATGCTCAGGCCAGAAGTCCGACTCAGTTGATGCCCTCCATGAGCTTATTATCTTAACAAGGAAGTGCTGTGACCACCCTTATCTCCTTGAGCCGGCACTGCATAATTCTGTTGTTCAGGGTCTACCTGTTGAAGAACATTTAGATATTGGCATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTGGAAGCAAAAAGACTTGGGTTAAGGGTGTTAATATTATTTCAGTCAACTAGTGGTTCTGGATCGATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTGCGATATGGTAGAGCTTATACCCCTAAAACAAAGGAAGCCGCTTTATACACATTTAATGATAGAGACAGTGGAAAATTTGTCTTCTTGATGGAAAACCGTGCTTGTCTCCCTAGTGTTAAGCTTTCTTCAGTGGACACTGTTATATTGTTTGACAGTGATTTTGACCCACAGAATGACCTAAGAGGCTTACAAAGAATGTCTATCAGCTCGCAGTTGAAACAGTTAACCGTTTTCAGGTTGTACTCATTTTACACGGTTGAAGAAAAAATTTTAATGCTTGCAAAGGAGGGTACATCTCTCGACAGTAATGTGCGGTTGATTAGCCAGAGTATTTCTCACACCCTTCTAAAATGGGGCACCTCCCATTTGTTCAATAAGCTAGATGATTTACATGCCAGTGTAACTTCTGTTTCTACTCCAGACATTGCAGATCAATCACTTCGACATGATGTACTCTGTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATATTGATTGTCATGAATGGTCATTCATATCAACAATACAGCAGAATGGAGGGGAATATGCGAGGAACATTCTATTGCTAGGAGAAAGAATAATGAAGGGATTGGGCAGTGAGCCACGTGCTTTTTCCTGGAGTGATCTTGAAGGAAGGTATCCTCAATGGAAATTTTTGTCTGTTTCATCTCAGAGGATGAGGAGTAGGGTCAAACATTCTGATTACATAGTAAACGAATCTGGATGTGAAGATCATACAAGTATAGGAAAGAGGACATCATCAAATGCTTCCAAGAAGAGAAAAGTGTCCTGGGATAATGTTGATCATAATTTGAAGAAACTGACCAAGGATAAAGTTGACCCCAATAGGAGGAAAATGTCCAAAGACGTTGTTGAAACAGAGGGGAGGGAACTGTCAAATCATGCCATTGATCCTAAGACTAGGAAGGTGTTCAATGATATTGTTGATTCTAGGGGCAGGAAAATGTCTAAGAATATTCCTGATTCCAAATATCGGAAACCAAGTTCGAGGAGCAAGAAGAATTCAAGTGTTACCAATAGAGCAAGTAAATCAAATGGTAGTTCAAATGGTTTGCCTAGTCTACTTGATTCCACAGGGAATCCTTTGGTCAATGCAACTACAGGGGAAACTGCAACGAACATGCAACTTTCTGAGAAAAGGAAACTGCATGACGGACCAAATAGCATCAAATTCTTGCCAAAGTCGGATGTATCAGGTCTTTGTGACATTCTACATTTTCCGAAAAATGTCAAGGTTGTTGCCCTGAGGATTCTTGAGGACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTGGCAGCTTCTTTGTTGAAACATGAGATTGATAGGAAGGATTCACTCACTCTAGCAAAACTGTGCTTGAATTTCAATTGCAATGAAGAGGAAGCCACGGATGTCTACTCAGAACTGTGGAAACATGTGAAGAAATTTTCTAATTATATACAGAATGGACCGTGTGTTGAGAAATATAATATAAATGGTGCTTCAGAAAATAACATGCCTGAGATGAATAATTTGACGGAGGAGAAGCAGAACGATTTTCTGGATACTTGTGTTACAAAACTTGTGAAATCTGTAAAAAGTGAACATGATCTTCAAATGAAATCTCCCACAACAGGGGTTTCATGTGACCAGACTTTTACTCTTGGAATTTGTTCATTTCCAAATACACCTGCTAGTTTTCCTGTGGAAGCAATTTCTCTTTCCTTGGAGTTTGGCTCCAAAGATGACATCATGGAATCTATGTCCTTAATAGCTGCAGAAGATTCAGCTCTTGAGCCCGGGAGTAATGATGTCAACCCTCTTACTGATTATTTGGAAAAACATAGTCCTATTAGAATTACAGATATTACACAATCTGATGGAAAAGTTTGTGAAGATCCTCAAGTTTTAGTGAATGAATTGGTTGCTATTGAGAATGCTATGAATATGTCTACTCATTCTTTGCAGCTTGACAGTGATGAGGCAAATGCTGTAACTTCCATTGGTTCTGCTGTTCCTGAGGCCAGACTGTGGGGCAGTGTAATGAGTCCCGTATGTAATGAGTCAATTGGTCTGAAGTTTGCTGAGACAACCTTATATACACAACCATCAGATACTAATTTGTGGCCGTTGCCTCAGATAGCAACGTCTGATATTCCATCTATTCCGGAGCACAATTCAGCTAGTACTGTCACGCCTCTAGATAATATTTTTTATCATAATCGTGAGGATCATTGTTACATTCATGAGGCCGAAGTAATATCGGAAGCACCAAACGACCTTGCGGAACCAGTTAACTCTTTCTTTGGTTCACCTGTGATACTGCAACCATTCACAAATGTGCCCATGAATGAAAATATGACACATGTACCTGACAGTTTTACTATTCCTGGATATATGAACAGTGATTATTTTCAACATCACCATGTGGCATCTGAAATATCCCACCTTGCCTACCTAGACTCACTACTGGGTGAAATGGAGAGAATAGAAAACACGAATGAAGAAGCCTTCATAGATCCACTACCAATTGAAATGGAGAGAATAGAAAAGGATAATGAAGAAGCCTTCAAGATACATGAGCAGAAGCTTACATTTTGTTTCTTTGTGGAGCAGATATCGCTGCTCCGATCTGAATATGAAAAGGAGGTTGAAAAATTGAGTGAAAAGTACAGGATTTTGCTTCAGAATGTTGATACTGAGGTAGCACTCAAAAAAATGGAACTTGAGACCCAATGTAAATTAGTGTTGAGCAGTGAGGTATTAGCTGAAGTTTGGATCCATATGCTTGATGGTTGTGAAAGGGCTGTGGGACAATGCTCAGAACAAGGTCAATCCTTGGACAGCCATCCAGAAGAAATCAACCCACTTATAGCATGCTTTGATCCCATGATTCAGTTGTGCAACAATTTTCCTGATGGCTATAATTTACTTGTCGCCTCTGCTGCCGCTTCACATTCTTCAGCAATTGCCTTGACATTATATAGAATTGCAACCTTAGTATCATTTAGAAGAACCAGGTAA 5019 0.3917 MKDTSTENHTAVYDVSDQTLVMDEEGGDARSKCIEGLAKEYTNNTQANSHVKDKNRGKDVVCSNCLGGGVLLCCSGKGCQKRYHPSCVYPPLKYIPLRFWHCIWCTKKKIEFGVHSVSEGVKSILDSREVVSNNKVMQREYFVKYQGLAHAHNRWITESIMLLEAPKLLAKFKSKLQVQLPFIFFGTPMVTRWKRIWSIPHRLLLKREIVHFDGHGDNDSICCYEWLVKWTGLGYDNATWELQDASFLTSAKGRKLIHDYESRRKRVDELSKSHFEDNEERETFVAELSVLPFGYSRGLYNQYLSYVNKLRMCWHKGQNALIVDDQIDQERIIKVILFVLSLNCNSKRPFLIISTSTALSVWETEFLHLAPSANLVVYKGNRDIRSGIRALEFFNEENGVLFQILLSSSDVVVKDLHELRCIPWEAIIIDECQQSRISGHLDSIKILKTEMKLLLVSGQIKEDRSDYIKLLSFLDSAHHGSSITPIENSFNASISNLKSQLEKYVVFKCKLGSTRFVEYWVPACLSHLQLEQYCSMLLSNLMLLCSGQKSDSVDALHELIILTRKCCDHPYLLEPALHNSVVQGLPVEEHLDIGIKASGKLLLLEKILLEAKRLGLRVLILFQSTSGSGSIGDILDDVLCQRFGKDCYVRYGRAYTPKTKEAALYTFNDRDSGKFVFLMENRACLPSVKLSSVDTVILFDSDFDPQNDLRGLQRMSISSQLKQLTVFRLYSFYTVEEKILMLAKEGTSLDSNVRLISQSISHTLLKWGTSHLFNKLDDLHASVTSVSTPDIADQSLRHDVLCELSSQLVCGADDIDCHEWSFISTIQQNGGEYARNILLLGERIMKGLGSEPRAFSWSDLEGRYPQWKFLSVSSQRMRSRVKHSDYIVNESGCEDHTSIGKRTSSNASKKRKVSWDNVDHNLKKLTKDKVDPNRRKMSKDVVETEGRELSNHAIDPKTRKVFNDIVDSRGRKMSKNIPDSKYRKPSSRSKKNSSVTNRASKSNGSSNGLPSLLDSTGNPLVNATTGETATNMQLSEKRKLHDGPNSIKFLPKSDVSGLCDILHFPKNVKVVALRILEDIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHEIDRKDSLTLAKLCLNFNCNEEEATDVYSELWKHVKKFSNYIQNGPCVEKYNINGASENNMPEMNNLTEEKQNDFLDTCVTKLVKSVKSEHDLQMKSPTTGVSCDQTFTLGICSFPNTPASFPVEAISLSLEFGSKDDIMESMSLIAAEDSALEPGSNDVNPLTDYLEKHSPIRITDITQSDGKVCEDPQVLVNELVAIENAMNMSTHSLQLDSDEANAVTSIGSAVPEARLWGSVMSPVCNESIGLKFAETTLYTQPSDTNLWPLPQIATSDIPSIPEHNSASTVTPLDNIFYHNREDHCYIHEAEVISEAPNDLAEPVNSFFGSPVILQPFTNVPMNENMTHVPDSFTIPGYMNSDYFQHHHVASEISHLAYLDSLLGEMERIENTNEEAFIDPLPIEMERIEKDNEEAFKIHEQKLTFCFFVEQISLLRSEYEKEVEKLSEKYRILLQNVDTEVALKKMELETQCKLVLSSEVLAEVWIHMLDGCERAVGQCSEQGQSLDSHPEEINPLIACFDPMIQLCNNFPDGYNLLVASAAASHSSAIALTLYRIATLVSFRRTR 1672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02035 1672 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 115 IPR013083 -
Phco2g02035 1672 Gene3D - 515 750 IPR027417 -
Phco2g02035 1672 SMART chromo_7 196 265 IPR000953 -
Phco2g02035 1672 SMART chromo_7 118 177 IPR000953 -
Phco2g02035 1672 SUPERFAMILY FYVE/PHD zinc finger 51 109 IPR011011 -
Phco2g02035 1672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 480 IPR027417 -
Phco2g02035 1672 Coils Coil 1485 1505 - -
Phco2g02035 1672 SMART PHD_3 61 106 IPR001965 -
Phco2g02035 1672 Coils Coil 1535 1562 - -
Phco2g02035 1672 ProSiteProfiles Chromo and chromo shadow domain profile. 204 272 IPR000953 -
Phco2g02035 1672 Pfam SNF2-related domain 315 572 IPR000330 GO:0005524|GO:0140658
Phco2g02035 1672 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 69 1146 - -
Phco2g02035 1672 SUPERFAMILY Chromo domain-like 81 175 IPR016197 -
Phco2g02035 1672 ProSiteProfiles Chromo and chromo shadow domain profile. 119 175 IPR000953 -
Phco2g02035 1672 SUPERFAMILY Chromo domain-like 188 263 IPR016197 -
Phco2g02035 1672 Gene3D - 120 176 - -
Phco2g02035 1672 ProSiteProfiles Zinc finger PHD-type profile. 59 108 IPR019787 -
Phco2g02035 1672 Gene3D - 191 263 - -
Phco2g02035 1672 MobiDBLite consensus disorder prediction 912 986 - -
Phco2g02035 1672 Gene3D - 299 514 IPR038718 -
Phco2g02035 1672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 311 478 IPR014001 -
Phco2g02035 1672 Pfam Chromo (CHRromatin Organisation MOdifier) domain 121 175 IPR023780 -
Phco2g02035 1672 ProSitePatterns Zinc finger PHD-type signature. 62 105 IPR019786 -
Phco2g02035 1672 MobiDBLite consensus disorder prediction 989 1033 - -
Phco2g02035 1672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 517 753 IPR027417 -
Phco2g02035 1672 MobiDBLite consensus disorder prediction 895 1039 - -
Phco2g02035 1672 Gene3D - 1503 1593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02035 Phco-Chr2 51075175 51097313 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco2g02035 SNF2_N 3.7e-08 CL0023