Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02023 ATGAAGATTCCTTGTTCTTTTTGTACTTGTTTCTCAGCAGCAGTCAAAGAACAACAAACTAAGCACGAAGAGCCAGGTGAAGATTATGATGGAAACTTTCGCATATTCAGTTATAGAGAATTGGATTCCGCCACGCGGGGTTTTCATCAATCGGAAAAGATTGGAGAAGGAGGCTTTGGCTCTGTCTACAAGGGGCAGCTTCGGGATGGAAGTTTGGTGGCTGTTAAAGTGCTTTTGATTGAGCTAGATTCCGCAAGAGGAGAGAGAGGGTTTGTGGCAGAATTGAATACACTAGCAAATATCAAGCACCAAAATCTAGTTATTCTTCGAGGGTGTTGTGTTGAAGGAGCCCACAGATACATAGTCTACGATTATATGGAAAACAACAGCCTCCGTCACACATTCTTAGCTTCTGAGGAAAAAAGAATGACATTCAGCTGGGAGGCTCGGATGGGTGTATCAATAGGTGTAGCCAGAGCACTTGCCTTTCTCCATGAGGAACTTCAACCCCATATTGTGCACAGAGATATCAAATCCAGCAATGTTCTTCTTGATGGAAATTTCACACCAAAAGTCTCAGATTTTGGCCTGGCCAAGCTACTAAGAGAAGAAAAATCCTACATCAGTACCCAAGTTGCAGGCACATTAGGTTATATTGCTCCGGAATATGCCAGTTCTGGCCACCTGACACGAAAATCAGATGTTTATAGTTTTGGAGTACTACTTCTTGAAATTGTCAGTGGCCAAAGAGCAGTAGATGAACATCAAGGTGTGGATCGTTTCTTGGTTGAGAAGTCTTGGGCAGCGTACGAGGGTAATGATCTTTTGAGAATGGTGGATCCAATGCTGAACATGAACTATCCGATGGAAGAAGCTAAACGGTTCCTAATGGTGGGACTTTGTTGCGTGCAAGAAACGGCCAGGATCAGGCCACGAATGTCAGAGGTTGTAAACATGTTGAGCAACACCACCGAGATGGGAGAGTTTCATATTTCACGACCAGGATTTGTTAATGATATGAGGAACGCCAGAATGAGGAGGCAACTAAATTCATCAGAGGAATCAAGTGCTAGTGCAGCAACCTTTGCAGATTCCTCCGGGTGGAGTACCACCAATCTTGCTCGTTAG 1128 0.4406 MKIPCSFCTCFSAAVKEQQTKHEEPGEDYDGNFRIFSYRELDSATRGFHQSEKIGEGGFGSVYKGQLRDGSLVAVKVLLIELDSARGERGFVAELNTLANIKHQNLVILRGCCVEGAHRYIVYDYMENNSLRHTFLASEEKRMTFSWEARMGVSIGVARALAFLHEELQPHIVHRDIKSSNVLLDGNFTPKVSDFGLAKLLREEKSYISTQVAGTLGYIAPEYASSGHLTRKSDVYSFGVLLLEIVSGQRAVDEHQGVDRFLVEKSWAAYEGNDLLRMVDPMLNMNYPMEEAKRFLMVGLCCVQETARIRPRMSEVVNMLSNTTEMGEFHISRPGFVNDMRNARMRRQLNSSEESSASAATFADSSGWSTTNLAR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02023 375 SUPERFAMILY Protein kinase-like (PK-like) 28 340 IPR011009 -
Phco2g02023 375 Gene3D Transferase(Phosphotransferase) domain 1 126 332 - -
Phco2g02023 375 FunFam Putative LRR receptor-like serine/threonine-protein kinase 126 332 - -
Phco2g02023 375 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Phco2g02023 375 SMART serkin_6 48 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02023 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Phco2g02023 375 Gene3D Phosphorylase Kinase; domain 1 9 125 - -
Phco2g02023 375 Pfam Protein tyrosine and serine/threonine kinase 49 320 IPR001245 GO:0004672|GO:0006468
Phco2g02023 375 FunFam Serine/threonine-protein kinase receptor 17 125 - -
Phco2g02023 375 ProSiteProfiles Protein kinase domain profile. 48 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g02023 375 CDD STKc_IRAK 54 320 - -
Phco2g02023 375 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02023 Phco-Chr2 50939837 50941564 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco2g02023 PK_Tyr_Ser-Thr 6.2e-48 CL0016