Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02018 ATGCTAAAAGGGTACCCTCACTGTAATTATGGCTTAATCATTCAGTACCAACCAAAGCCTCTTGTAAAGCTGTTTGCTTCTACTTTGCTAGAAAGCAAACCACTTCAATACCCTTTTACCAATATGCAAATGATACCCAGTGATCCCTTTTCACTATCCACTACCCTCCCAGGGCTTCCCAATGAACAAAACACAAACCCTAACCCTAATCCTCCCCCTCCACTTACCAAGAAGAAGAGAAACCTACCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCAAAGACTCTCATGGCCACGAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTCCGGAAGAAGGTATATATCTGTCCAGAGAAGACCTGTGTCCACCACCACGCCGCCAGGGCTCTCGGCGACCTCACCGGAATAAAAAAGCACTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGTACCAGAGAGTATAAGTGCGACTGTGGCACCCTCTTCTCCAGGAAGGACAGCTTTATTACTCACAGGGCTTTCTGCGATGCCTTAGTCGAAGAGAGTTCGAGACTCTCTTCAGTTGCTACCAGTAGTCTAAATTTCAAGAGCGAAGATGCAACTGTGATGAATACACAGGTTGGTTTGTCGTCACGTGGATTAATCACTGGTCAGGGAATGCAGAGTGTTCCACACTTTGGTCCACATGGGTTTCGTTTAATGGGAATGGGTGCAGACCAACAAAGACCAAACTTGTCACTGTGGTTGAATCAGGGAAATCATCACATCAATAACCCACTTGATGTGGCATCATCAAGTTCTTCAGGTTTGCCTGAGGTTGTGCAAATTGCACAAGCTAATAATGCCTTGATTGGTTCTTCTTCTATATTCTCCAATTTTGGAATGCCTGCATCCAATTCAAAGGGAGAAGGGGGAGCTTCCGATTTGGCATCTATTTATTCTGAGAGTCAAAACAAGAATTCAATCTCAGCTTCCCCAATGTCGGCCACTGCCCTTTTGCAGAAGGCAGCACAAATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGAGGCAGTTTTGGAGTGATGAGCTCATCTTCCACCCAAAGTACTAGTCTCAATAGCAATGCAAACCAAAATTGTGATCAACTTAACCAAGCCTTTCAGAACATGAACCAGCATGAGAATTTCAATGGATCAAGCAGCAGTGCAACTATGTTGGGCAGTTCTACTGACTTTAGCTCATTGACACATTCATCAAACGGTTTTGATCAGTTTCTGATGCAAAACAATGTGGAACCAACTCAGCTAAAGCCCCATCCAGCCTCAAACACAGTGGAACATAACTTGACAAGAGATTTTCTTGGCATGAGTAGAAATGGAGGTGGACATCCATTTCTACCCCAAGAGCTGGTCAAGTTTGCTTCCTTAGGCTCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1623 0.4479 MLKGYPHCNYGLIIQYQPKPLVKLFASTLLESKPLQYPFTNMQMIPSDPFSLSTTLPGLPNEQNTNPNPNPPPPLTKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHHAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALVEESSRLSSVATSSLNFKSEDATVMNTQVGLSSRGLITGQGMQSVPHFGPHGFRLMGMGADQQRPNLSLWLNQGNHHINNPLDVASSSSSGLPEVVQIAQANNALIGSSSIFSNFGMPASNSKGEGGASDLASIYSESQNKNSISASPMSATALLQKAAQMGSTRSTNPSIFRGSFGVMSSSSTQSTSLNSNANQNCDQLNQAFQNMNQHENFNGSSSSATMLGSSTDFSSLTHSSNGFDQFLMQNNVEPTQLKPHPASNTVEHNLTRDFLGMSRNGGGHPFLPQELVKFASLGSSMGLNQFTAGHQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02018 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 128 IPR013087 -
Phco2g02018 540 SMART c2h2final6 182 202 IPR013087 -
Phco2g02018 540 SMART c2h2final6 106 128 IPR013087 -
Phco2g02018 540 SMART c2h2final6 147 177 IPR013087 -
Phco2g02018 540 Pfam Zinc-finger double-stranded RNA-binding 106 128 IPR022755 -
Phco2g02018 540 Coils Coil 423 443 - -
Phco2g02018 540 Gene3D Classic Zinc Finger 84 160 - -
Phco2g02018 540 MobiDBLite consensus disorder prediction 64 79 - -
Phco2g02018 540 FunFam protein indeterminate-domain 5, chloroplastic-like 160 239 - -
Phco2g02018 540 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Phco2g02018 540 SUPERFAMILY beta-beta-alpha zinc fingers 105 202 IPR036236 -
Phco2g02018 540 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 66 513 IPR031140 -
Phco2g02018 540 MobiDBLite consensus disorder prediction 50 90 - -
Phco2g02018 540 FunFam protein indeterminate-domain 12-like 85 153 - -
Phco2g02018 540 Gene3D Classic Zinc Finger 161 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02018 Phco-Chr2 50870332 50873618 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g02018 zf-C2H2_jaz 8e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02018 2 50870332 50873618 Phco2g02018 2 50870332 50873618 ECH
Phco2g02018 2 50870332 50873618 Phco6g00631 6 6283332 6285216 PCT