Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02001 ATGCACGGAACACCAGAAGAAGAGACAGTGCAGAGGATCGGATACCTATCCATGGACCCATTCGGGTTAATGGATATACTCGACCTTTACTTTCCTCAACAACTCTTCACCGTCGAAGAAACCTGGCTCAACCTCACTTCCTCCCTTCTTTCCTTCTTCTCTTCACCGGCAGGACAAAACCTTGTTTCTCAGGTGAAAAATGGTTACGGAAACAATACCTTGTCACTTGACTTTCAGCAGTTCCAACAGATTTATCATGTTGAGGAATTTTATAAGATGTTAGAGGAGAAGCCTAAAATTGCTCTCTTATGTATGAATGCTGCTGTACATAAGGTTTTGCTTTCCAAATGGGAGAATGACGATCTGGTGCTTGGTGCAAAGGTAGATATTCGTCTTCATAACTGTCCTAAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTGGTCTCAGTTCGTGGTACTGTTGTGAAAGTCAGCACTGTCAGGCCACTGGTGGTGCAAATGTGTTTTGAATGCTGTAAATGTAGACAAGCAATTTCACGTATATTTCCTGATGGAAAGTATTCTCCACCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCGCTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGATCATGAAGAAGGACGAGTGCCTCGAACAGTGGAATGTGAGCTTACCCAGGATCTTGTTGATGCATGCATACCTGGAGATGTGGTTACTGTTACTGGAATTATAAGAGGAATTAACACTTACATGGATATTGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTATCCATAAAAAATTCAAAGTCGCAGTCCATGTCTGAGGATCTGCAGGACTCTAATCCCAAAACTAGGCCAGCTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCACAGGAACATGGTTCAGATTTATTTCGTCAAATCCTTCAATCCATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGTCATTATTTGGTGGTGTACGGAAGCATTCAATGGATCAGAACAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTACTACAAGCAGCAGCAGCAGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATCCTATGACAAGTGACTATGCTTTTGAAGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCTGAGCATCAGGCTTTATTGGAGGCGATGGAACAACAGTGTGTCTCTATTGCCAAGGCAGGATTAGTAGCAAGTTTATCATCCAGGACTTCTGTCTTAGCTGCTGCAAATCCCGCTGGTGGTCATTATAACCGAACAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCACTTCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAGCAACTCTCGGACCACATTATGGCACTTCATGGTGGGAATGGACAACTTTCACCAGCGTTGAAAAAGCGACGTGGAGATTCATCTGATTCCAGAGCTACTGTATCACAGAATTCAGGATGTGTAGCAGATCTGGGCGTTAGATCTGGATCCTTAATCTCAAGATTGAGACTTGACCTACTAAGAGACAGTGATTTTATTCCATTACCTGGTCAACTTCTTCGCAAATACATTGCTTATGCGAGGAGTTTTGTGTTTCCTAGGATGACGAAGCCAGCTGCAGAAATCTTGCAAAAGTTTTACCTAAAACTGAGGGATCACAATACTTCGGCTGACGGTACTCCTATAACAGCTAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGGGCTCGGCTGGACTTGAGAGTAGAAATAACGGCCCAGGATGCAACGGATGTTGTTGAAATCATGAAAGAGTCTCTCTATGATAAATATGTTGATGAGCATGGAATCGTGGATTTTGGTCGAAGTAGTGGTATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTCAACAAGCAATCGGAATCGGAGCAGAAGGATTGCTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATATTGACACTTTCATCGAAAATTTAAACAGTGTTGGTTATCTACTCAAAAAAGGACCAAAGACATACCAGGTATTATCCTCTTCTTATGCACGAAGCCAACCGTTTAAGACAAGGGGTTAA 2418 0.4165 MHGTPEEETVQRIGYLSMDPFGLMDILDLYFPQQLFTVEETWLNLTSSLLSFFSSPAGQNLVSQVKNGYGNNTLSLDFQQFQQIYHVEEFYKMLEEKPKIALLCMNAAVHKVLLSKWENDDLVLGAKVDIRLHNCPKTMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMCFECCKCRQAISRIFPDGKYSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAVSIKNSKSQSMSEDLQDSNPKTRPAELFDLFSFSSKDLEFVVKFAQEHGSDLFRQILQSICPSIYGHELVKAGITLSLFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPAGGHYNRTKTVNENLKMSAALLSRFDLIFILLDKPDELLDKQLSDHIMALHGGNGQLSPALKKRRGDSSDSRATVSQNSGCVADLGVRSGSLISRLRLDLLRDSDFIPLPGQLLRKYIAYARSFVFPRMTKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRVEITAQDATDVVEIMKESLYDKYVDEHGIVDFGRSSGMSQQKEAKRFLNALNKQSESEQKDCFSVSEIYSLADRISLKVPDIDTFIENLNSVGYLLKKGPKTYQVLSSSYARSQPFKTRG 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02001 805 SMART AAA_5 392 544 IPR003593 GO:0016887
Phco2g02001 805 Coils Coil 463 483 - -
Phco2g02001 805 CDD MCM8_WHD 726 791 - -
Phco2g02001 805 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 50 745 IPR031327 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 Pfam MCM AAA-lid domain 621 704 IPR041562 -
Phco2g02001 805 Gene3D - 169 219 - -
Phco2g02001 805 Gene3D - 142 271 IPR012340 -
Phco2g02001 805 ProSiteProfiles MCM family domain profile. 348 555 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 SMART mcm 138 705 IPR031327 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 Pfam MCM P-loop domain 346 559 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 710 IPR027417 -
Phco2g02001 805 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Phco2g02001 805 Gene3D - 326 713 IPR027417 -
Phco2g02001 805 SUPERFAMILY Nucleic acid-binding proteins 68 272 IPR012340 -
Phco2g02001 805 Pfam MCM OB domain 142 270 IPR033762 -
Phco2g02001 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 502 514 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 529 537 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 451 465 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 478 491 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco2g02001 805 CDD MCM8 352 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02001 Phco-Chr2 50706458 50718305 Transposed