Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02000 ATGGCCGACGGTCCGTCCAGTCCGGGAGGCGGCAGCCACGAGAGCGGTGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGACAGGTACCTCCCCATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATAGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCTACCCTTGGTTTCGAGGATTATATCGATCCCCTGAAGATTTACCTGACAAGATACCGAGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGAGACACCTCTGCTAAGAAAGATGTTCAACCGAGTCCTAATGCTCAGCTTGCTCATCAAGGCTCTTTTTCACAAGGTGTTAGTTACACAAATTCTCAGGGTCAACATATGATGGTTCCAATGCAAGGTCCAGAGTAG 510 0.5176 MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSAKKDVQPSPNAQLAHQGSFSQGVSYTNSQGQHMMVPMQGPE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02000 169 Gene3D Histone, subunit A 16 154 IPR009072 GO:0046982
Phco2g02000 169 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Phco2g02000 169 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Phco2g02000 169 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Phco2g02000 169 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Phco2g02000 169 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 16 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco2g02000 169 SUPERFAMILY Histone-fold 27 128 IPR009072 GO:0046982
Phco2g02000 169 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco2g02000 169 MobiDBLite consensus disorder prediction 1 28 - -
Phco2g02000 169 MobiDBLite consensus disorder prediction 117 169 - -
Phco2g02000 169 MobiDBLite consensus disorder prediction 131 162 - -
Phco2g02000 169 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02000 Phco-Chr2 50699482 50704498 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco2g02000 CBFD_NFYB_HMF 1.1e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02000 2 50699482 50704498 Phco2g02000 2 50699482 50704498 ECH
Phco2g02000 2 50699482 50704498 Phco6g00832 6 8200928 8203694 PCT