Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01995 ATGGCAATGGCGCCCTCAACTCCCTCTAGTGGCTCTGGCAAGAAGGTTAGAAAGCCTTATACTATCACCAAGTCTAGGGAGAGCTGGTCTGAGGAGGAGCATGACAAGTTTGTCGAAGCTCTTCAACTATTTAACAGAGATTGGAAGAAAATTGAGGATTTTGTTGGTTCAAAAACAGTTATTCAGATTAGAAGTCATGCCCAGAAGTACTTTCAGAAAGTTCAGAAGAACGGGACAGTAGCACATGTGCCTCCTCCTCGTCCTAAGCGTAAAGCTGCTCATCCTTACCCCCAAAAGGCATTCAAAAATGTTTTGGTGCCATTGCCAGCTTCCCTGGTATATGTTTCTTCCACTAGTACCCCTCCACCCGGGTATGCCACATGGGATGAAAATTTCTTGCTTATGAATTCTGGATCCAACAAATCAGTGTCCTATCAGGATGAACTCACCAATCTTCATGTAGATGAAGCTGATATTGGATCAAAGGGGGTGACAATAATTGGCAACAGCTGTCTTAGTGGTGTTGGGAACTCTACTAGAAAGTTGTCTGGTACGGAGATGCCAAAACAAGGGAAACAGACTCAGGTGCTTCATGGTTTACCAGATTTTGCTGAAGTTTACAGTTTCATTGGAAGTATTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAAAAACCTCACTCTCAACTTGTCTAGTCCTGACTTTGTGCCCGTTAGGAATGCCATCTCATCATACGATGCCAACGCGGAATTTGGGCAGAAATTGATGTCAAGAAATGGACAAACGATCTATCATGTCAAACAGCTCAACAAACATTAA 870 0.4264 MAMAPSTPSSGSGKKVRKPYTITKSRESWSEEEHDKFVEALQLFNRDWKKIEDFVGSKTVIQIRSHAQKYFQKVQKNGTVAHVPPPRPKRKAAHPYPQKAFKNVLVPLPASLVYVSSTSTPPPGYATWDENFLLMNSGSNKSVSYQDELTNLHVDEADIGSKGVTIIGNSCLSGVGNSTRKLSGTEMPKQGKQTQVLHGLPDFAEVYSFIGSIFDPDTKGHVQKLKEMDPINFETVLLLMKNLTLNLSSPDFVPVRNAISSYDANAEFGQKLMSRNGQTIYHVKQLNKH 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01995 289 ProSiteProfiles SANT domain profile. 24 75 IPR017884 -
Phco2g01995 289 FunFam protein REVEILLE 6 isoform X1 28 76 - -
Phco2g01995 289 SMART sant 25 73 IPR001005 -
Phco2g01995 289 MobiDBLite consensus disorder prediction 1 27 - -
Phco2g01995 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Phco2g01995 289 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Phco2g01995 289 CDD SANT 28 71 IPR001005 -
Phco2g01995 289 NCBIfam myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Phco2g01995 289 Gene3D - 29 76 - -
Phco2g01995 289 PANTHER SWI/SNF COMPLEX-RELATED 12 248 - -
Phco2g01995 289 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Phco2g01995 289 MobiDBLite consensus disorder prediction 1 16 - -
Phco2g01995 289 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01995 Phco-Chr2 50640882 50642794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco2g01995 Myb_DNA-binding 1.7e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01995 2 50640882 50642794 Phco6g00829 6 8171971 8178140 PCT