Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01990 ATGGATATTAAGGAAGCAGAAAGGGTGGTGATTGCCAAACCTGTTGCTTCAAGGCCTACTTGTTCTACTTTCAAATCTTTCTCAGAGCTCCTTGCTGGTGCAATCAATGTTTCTCCTGATATTGTGTCTTCTCAAGCAACAGTTTCTGCCATTAGACCCAAGACTGTGAGGTTCAAGCCTGCAGCATTGAATCACCCCCCTGCTGGGTTTGATTCTTCTCAGGCAGATACTTTTGGAGCTGCACTTAGTAACCCTTCTGAAAAGAGTCTAAAACTTGACACCAATCAGTCCCTCATATACAAGCCAACGGCAAAACTCGTTTCAAAGACAACCGTGTCTCTTTTGGCAAATATGGGAAATTGCAGCACTGGTCAGCAGCCAACACGGCAATTAATGGAGGCAAATTTTCAACATTCCATCAATGAAAAATGTAGAACCAACATGAGTTCACATCTTGATCAGAGTATTGCCCTGCATTCAGAAATAAATCAGATCAGTGAACCTAGTAAGATGGTGCAGCAGAACACAGAGGAAGACCAAAAGACTTTAACATCCTCAGCGAATTGTGATCGACCATCTTATGATGGGTACAATTGGAGGAAATATGGTCAGAAGCAAGTAAAAGGGAGTGAGTACCCCCGAAGTTACTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTTGAAGCCACAGCTTCCTAAACGAAACACAGCATCAGGGACACAAGGTTCGGGGGTGGTGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGAAGGCAATGATAGTAGAGTTGACAACACTGGAGGACTGTCTGTGCTTTCAGATTATTATGTCAAAGTTCCACAGCCCAATGATTCTGTTCTAAATGTTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGTTTTGAGGCACAGGAAGAAGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCAATCTAATGAAGTAGCATTATCAGAGGAAGGTTTAGTAGAGCCGCGGATTGTGATGCAAAGTTTCACGGATTCTGAAATACTAGGAGATGGATTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGTAATCCATATCCCAGAAGTTACTATAGGTGTACTAATATTAAGTGCAACGTTCGCAAACACGTGGAGAGAGCATTAGATGACCCGAGATCATTTGTGACGACATATGAGGGAAAACACAATCATGAAATGCCTCTGAAGAACACTGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCACATAATTGA 1410 0.4234 MDIKEAERVVIAKPVASRPTCSTFKSFSELLAGAINVSPDIVSSQATVSAIRPKTVRFKPAALNHPPAGFDSSQADTFGAALSNPSEKSLKLDTNQSLIYKPTAKLVSKTTVSLLANMGNCSTGQQPTRQLMEANFQHSINEKCRTNMSSHLDQSIALHSEINQISEPSKMVQQNTEEDQKTLTSSANCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHLKPQLPKRNTASGTQGSGVVSDGMVQDMWSNSHSERNEGNDSRVDNTGGLSVLSDYYVKVPQPNDSVLNVGATNAGGGSTENSCGLSGECEEGSKGFEAQEEEPRSKRRKNENQSNEVALSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERALDDPRSFVTTYEGKHNHEMPLKNTERDSQASLSKDKPHN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01990 469 SUPERFAMILY WRKY DNA-binding domain 383 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 138 459 IPR044810 GO:0003700
Phco2g01990 469 Pfam WRKY DNA -binding domain 392 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 Pfam WRKY DNA -binding domain 195 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 MobiDBLite consensus disorder prediction 318 336 - -
Phco2g01990 469 MobiDBLite consensus disorder prediction 318 368 - -
Phco2g01990 469 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 MobiDBLite consensus disorder prediction 254 271 - -
Phco2g01990 469 Gene3D WRKY domain 376 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 Gene3D WRKY domain 178 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 MobiDBLite consensus disorder prediction 249 271 - -
Phco2g01990 469 FunFam WRKY transcription factor 57 376 450 - -
Phco2g01990 469 MobiDBLite consensus disorder prediction 442 469 - -
Phco2g01990 469 ProSiteProfiles WRKY domain profile. 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 MobiDBLite consensus disorder prediction 343 365 - -
Phco2g01990 469 SUPERFAMILY WRKY DNA-binding domain 192 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 FunFam WRKY transcription factor 179 253 - -
Phco2g01990 469 SMART WRKY_cls 390 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco2g01990 469 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01990 Phco-Chr2 50596589 50598771 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco2g01990 WRKY 6.5e-25 CL0274