Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01989 ATGGGTTGGATTCCCTGTTCTGGATATTCAGGAACTAAGAACAAGATTGAGAAGATGGAAGTTCAGGACAGTCTCGTCGGTCAGATCAAAGCCACCCCAGCACAGACATTTGCATTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAACTGAATGTCTTTTGGGAGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTCGCCATTAAGCAACTTGACCGAAATGGACTCCAAGGAAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCATCATTCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCGTTAGGATCCTTGGAAGACCACTTGCATGACATTCCTCTTGGCAAGAAACGACTAGAGTGGAACACGCGAATGAGAATAGCTGCTGGTGCAGCAAAGGGATTGGAATATCTACACGACAAAGCTAATCCTCCTGTCATCTACCGTGATTTAAAGTGCTCTAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTTGGGGAAAACACACATGTATCAACTAGAGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCCATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGGAAAGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAGGGATCGAAGAAAGTTTTCACAAATGGCTGATCCAACACTCCAAGGTCAATATCCTCCAAGAGGACTATACCAGGCTCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAGGCTAACATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTAAACAAAAATATGATCCCAATACACACACAGTTCAAAACTCTCGCCTTGCTCCGGGTACTCCTCCTAGAACCAGGAGGGGGCTATGA 1068 0.4345 MGWIPCSGYSGTKNKIEKMEVQDSLVGQIKATPAQTFAFRELATATRNFRTECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHSNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPLGKKRLEWNTRMRIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFRDRRKFSQMADPTLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLAKQKYDPNTHTVQNSRLAPGTPPRTRRGL 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01989 355 ProSitePatterns Protein kinases ATP-binding region signature. 55 78 IPR017441 GO:0005524
Phco2g01989 355 FunFam Serine/threonine-protein kinase PBS1 126 341 - -
Phco2g01989 355 SMART serkin_6 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01989 355 Gene3D Phosphorylase Kinase; domain 1 19 125 - -
Phco2g01989 355 Pfam Protein tyrosine and serine/threonine kinase 53 321 IPR001245 GO:0004672|GO:0006468
Phco2g01989 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Phco2g01989 355 FunFam Serine/threonine-protein kinase PBS1 20 125 - -
Phco2g01989 355 PIRSF ILK 10 339 - -
Phco2g01989 355 MobiDBLite consensus disorder prediction 336 355 - -
Phco2g01989 355 PANTHER OS07G0668900 PROTEIN 28 335 - -
Phco2g01989 355 ProSiteProfiles Protein kinase domain profile. 49 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01989 355 Gene3D Transferase(Phosphotransferase) domain 1 126 344 - -
Phco2g01989 355 SUPERFAMILY Protein kinase-like (PK-like) 30 323 IPR011009 -
Phco2g01989 355 CDD STKc_IRAK 55 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01989 Phco-Chr2 50590087 50592760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Phco2g01989 PK_Tyr_Ser-Thr 2.9e-45 CL0016