Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01978 ATGGTGGTAAGGCTGTGTTACTTTATTGTCTTGTTCCTGACATCTTTTGAGCAGGAATTTAGCGATCCTCGAGATGCTGATGAAGCTAGATATAACTTGGATGGTCGTGACGTTGAAGGAAGTCGTATTATTGTGGAGTTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAATACATGGGTCGGGGTCCACCGCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGCCATTGGGCCCGTGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAAAGAGGTCATATAGAGAAGAACTGCAAGAACAGTCCCAAAAAACTGAGCAGCAGACGTGGACGCAGTCGTTCTCGTTCACCTGTGAGGTCACGTTCTCCTCGTCGTGGGAGAAGCAGGGATCGAAGCTACAGCCGTGACCGAAGCTACAGTCGATCGAGATCTCCTCCTGTTAGGAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACGGAGTCCTCAGCCTTCCAAAATAAGGAGGCATAGTGCATCGCCTGACCGCGGCAGCCCCCAGAAGGGAGGTGTCAGATCTCCTGGTAATGATAGGTTGGTCAATCAGCGAGATGGGTCTGAATACAGTGATGGTTCAAGAGAGAAAAGTAGAAGCCCTGCAAGGGACCGCAATGTGCGGGGCTATGATAGCCCTAAAGCTAATGGCCGTAGTGGCAGTCCCAGCCGTAGTCCTAGGGATGATGACAGGAGCCCCATTGATGAAGATGATGACAACCACCGCCGCTCACAGTCACCTTAG 798 0.5163 MVVRLCYFIVLFLTSFEQEFSDPRDADEARYNLDGRDVEGSRIIVEFAKGGPRGSREYMGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRRGRSRSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPPVRRERSPVSEDRSRSPQPSKIRRHSASPDRGSPQKGGVRSPGNDRLVNQRDGSEYSDGSREKSRSPARDRNVRGYDSPKANGRSGSPSRSPRDDDRSPIDEDDDNHRRSQSP 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01978 265 ProSiteProfiles Zinc finger CCHC-type profile. 91 107 IPR001878 GO:0003676|GO:0008270
Phco2g01978 265 ProSiteProfiles Zinc finger CCHC-type profile. 69 84 IPR001878 GO:0003676|GO:0008270
Phco2g01978 265 Gene3D - 89 136 - -
Phco2g01978 265 Gene3D - 60 88 - -
Phco2g01978 265 Pfam Zinc knuckle 90 107 IPR001878 GO:0003676|GO:0008270
Phco2g01978 265 Pfam Zinc knuckle 69 84 IPR001878 GO:0003676|GO:0008270
Phco2g01978 265 MobiDBLite consensus disorder prediction 134 182 - -
Phco2g01978 265 SUPERFAMILY RNA-binding domain, RBD 19 69 IPR035979 GO:0003676
Phco2g01978 265 MobiDBLite consensus disorder prediction 103 265 - -
Phco2g01978 265 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 60 88 - -
Phco2g01978 265 MobiDBLite consensus disorder prediction 241 265 - -
Phco2g01978 265 MobiDBLite consensus disorder prediction 110 133 - -
Phco2g01978 265 SMART c2hcfinal6 69 85 IPR001878 GO:0003676|GO:0008270
Phco2g01978 265 SMART c2hcfinal6 91 107 IPR001878 GO:0003676|GO:0008270
Phco2g01978 265 SUPERFAMILY Retrovirus zinc finger-like domains 60 108 IPR036875 GO:0003676|GO:0008270
Phco2g01978 265 MobiDBLite consensus disorder prediction 203 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01978 Phco-Chr2 50509645 50511136 Proximal