Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco2g01969 | ATGGATCATCATCTTCGTCGTCGCCAATACCACCATCCTCTAGCCCCTCTCTCCGAACCCACCGCTCCCACCACCCCCACCACCCCGAGCTCCACCTTCTTCCTCTCCACCTCCAGCAAGGCCCTCCTTCTCTCCAAATTCGCCACGCGCCTTGACACCCCCCACAAGAAGTATGTCAAGCAGGTCACCGGCCACCATAACGACACCGAGCTCCATCTCGCCGCTCGGCGCGGAGACCTCGCCGCCGTCCGCCAATTCCTCGCCGAGATTGACTCCATCATGATGGGGACCTTCGAGTTCGACGCCGAGATTGACCACATCAAGTCCGCCATCTTCAACGAGGTCAACGACCTCGGCGAAACCGCTCTCTTCACCGCCGCGGAAAAGGGTCACCTCGACGTCGTTCGCGAGCTCCTCCCTCACTCCACCGCCGAAGCCCTTTCCTCCAAAAACCGCTCCGGCTTTGACACCTTGCACATTGCCGCTAGCAAAGGTCATCTTGCCATTGTGCAGGTGCTACTAGACCATGACGCAGGGTTGATTAAGACGTTTGCGCAGTCAAATGCAACACCTCTAATCTCTGCAGCTACACGAGGACACGAGGCTGTGGTTCAAGAGTTGTTGTATCGGGATCCTAATCAGTTGGAGATGACTAGGTCCAATGGAAAGAATGCTCTTCATTTAGCCGCACGGCAGGGGCATGTGGGTGTTGTGAAGATACTGCTGAAGAAGGATCCACAACTTGCTCGAAGGACTGACAAGAAAGGACAAACTGCACTACACATGGCTGTCAAAGGGATTAGTTGTGATGTGGTAAAGCTCATTTTGGCTGCGGATGCAGCCATTGTCATGCTCCCAGACAGGTTCGGCAATACTGCATTGCATGTAGCCACCAGGAAGAAGAGGGCAGAGATAGTGAATGAGCTGTTACTTCTTCCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCTCTAGACCTTGCGGAGGGGCTTCCAATATCTGAAGAAATTCTGGAGATCAAAGAGTGTCTGATTCGTTATGGCGCAGTTAAAGCCAATGATCTCCACCAACCAAGGGATGAGCTAAGGAAAACCATGACACAAATTAAGAAAGATGTCTATTATCAGCTGGAACAAACTCGAAAAACAAACAGGAATGTGAGTGGGATTGAAAATGAGCTGCGCAAGTTGCACAGGGATGGAGTCAACAATGCTGCCAACTCAGTAACGGTGGTTGCTGTGCTATTTGGGGCAGGTGCATTTGCAGCACTTTTCACAGTTCCTGGTGGGGATTATAAAAATGGGATGGCAGTGATGGCACATAGTGCAGCATTCAAGGCCTTCTTCATATCCAATGCCTTGTCACTATTTTCATCATTAGCAGTGGTGTTGGTTCAAATCACCCTTGTTAGAGGGGAGGTAAAGACAGAGAGAAAGGTTGTGGAGGTGATCAACAAGATGATGTGGTTAGCCTCTGTATGCACTTCTGTTTCATACATTGCAGCATCTTATATAGTAGTTGGTCGGCGCAGCCAGTGGGCTGCAATACTTGTTACAGTTATAGGGGGGATCATAATGTGTGGTGTTCTGGGTACCATGACATACTATGTGGTGAAATCCAAACGCGCCCGAAGAGAGAGGAAGAAAGAGAAGAACTCCAAGAAAGAAGAAACGTGGCGTCTTTCAAATTCTGATGATTCAGAAATAAATCCAATCTTTGCCATTTGA | 1737 | 0.498 | MDHHLRRRQYHHPLAPLSEPTAPTTPTTPSSTFFLSTSSKALLLSKFATRLDTPHKKYVKQVTGHHNDTELHLAARRGDLAAVRQFLAEIDSIMMGTFEFDAEIDHIKSAIFNEVNDLGETALFTAAEKGHLDVVRELLPHSTAEALSSKNRSGFDTLHIAASKGHLAIVQVLLDHDAGLIKTFAQSNATPLISAATRGHEAVVQELLYRDPNQLEMTRSNGKNALHLAARQGHVGVVKILLKKDPQLARRTDKKGQTALHMAVKGISCDVVKLILAADAAIVMLPDRFGNTALHVATRKKRAEIVNELLLLPDTNVNTLTRDHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLHQPRDELRKTMTQIKKDVYYQLEQTRKTNRNVSGIENELRKLHRDGVNNAANSVTVVAVLFGAGAFAALFTVPGGDYKNGMAVMAHSAAFKAFFISNALSLFSSLAVVLVQITLVRGEVKTERKVVEVINKMMWLASVCTSVSYIAASYIVVGRRSQWAAILVTVIGGIIMCGVLGTMTYYVVKSKRARRERKKEKNSKKEETWRLSNSDDSEINPIFAI | 578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco2g01969 | 578 | SUPERFAMILY | Ankyrin repeat | 71 | 351 | IPR036770 | - | |
| Phco2g01969 | 578 | Gene3D | - | 294 | 348 | IPR036770 | - | |
| Phco2g01969 | 578 | MobiDBLite | consensus disorder prediction | 549 | 578 | - | - | |
| Phco2g01969 | 578 | Gene3D | - | 40 | 185 | IPR036770 | - | |
| Phco2g01969 | 578 | ProSiteProfiles | Ankyrin repeat profile. | 153 | 178 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | Pfam | Domain of unknown function | 404 | 509 | IPR026961 | - | |
| Phco2g01969 | 578 | ProSiteProfiles | Ankyrin repeat profile. | 221 | 253 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | Coils | Coil | 541 | 561 | - | - | |
| Phco2g01969 | 578 | ProSiteProfiles | Ankyrin repeat profile. | 255 | 287 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | FunFam | Ankyrin repeat-containing protein ITN1 | 41 | 179 | - | - | |
| Phco2g01969 | 578 | Gene3D | - | 186 | 293 | IPR036770 | - | |
| Phco2g01969 | 578 | SMART | ANK_2a | 66 | 95 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | SMART | ANK_2a | 255 | 284 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | SMART | ANK_2a | 289 | 319 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | SMART | ANK_2a | 187 | 216 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | SMART | ANK_2a | 221 | 250 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | SMART | ANK_2a | 153 | 182 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | SMART | ANK_2a | 118 | 148 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | Pfam | Ankyrin repeat | 290 | 318 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | ProSiteProfiles | Ankyrin repeat region circular profile. | 221 | 244 | - | - | |
| Phco2g01969 | 578 | ProSiteProfiles | Ankyrin repeat region circular profile. | 153 | 178 | - | - | |
| Phco2g01969 | 578 | Pfam | Ankyrin repeats (3 copies) | 192 | 279 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | Pfam | Ankyrin repeats (3 copies) | 71 | 178 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | PANTHER | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT | 51 | 559 | - | - | |
| Phco2g01969 | 578 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Phco2g01969 | 578 | ProSiteProfiles | Ankyrin repeat profile. | 289 | 322 | IPR002110 | GO:0005515 | |
| Phco2g01969 | 578 | FunFam | Ankyrin repeat-containing protein ITN1 | 214 | 334 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco2g01969 | Phco-Chr2 | 50412925 | 50415520 | Wgd |