Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01961 ATGTTAGCAATGAAGAGACAACGAGGTAATGAAGGATCCGAGAGCTTAGATTTGGCAAAGTGTCTTTTGCTGTTCTCTTGTCCACAAGAAAGTAACAAGGCACAAGAGAAAGGTTTTGGTTCTGTGGAATTTGAGTGCAAGACATGCAACCGCAAGTTCTCATCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAAGCAGAAAGTAGAAGGGGAAGAATTGAAAGAACAGGGAAAAAATCTTAGCTTGTGGAGCAAACCCAAAATGCACGAGTGCTCCATCTGTGGCCAAGAATTCTCTCTGGGGCAGGCTCTGGGAGGACACATGAGAAAACATAGAGGTGTCAGCAACGAAGGGTTCGTTCCTATTCCTTCTATCGACCAAGTTATTGCGAAAATCCCAGTTCTGAAAAGGTCCAACAGCACCAGGGTTACGTGCTTGGACTTGGAGTTACACCTGTAG 468 0.4594 MLAMKRQRGNEGSESLDLAKCLLLFSCPQESNKAQEKGFGSVEFECKTCNRKFSSFQALGGHRASHKKQKVEGEELKEQGKNLSLWSKPKMHECSICGQEFSLGQALGGHMRKHRGVSNEGFVPIPSIDQVIAKIPVLKRSNSTRVTCLDLELHL 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01961 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Phco2g01961 155 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Phco2g01961 155 PANTHER ZINC FINGER PROTEIN ZAT5 12 153 - -
Phco2g01961 155 SMART c2h2final6 92 114 IPR013087 -
Phco2g01961 155 SMART c2h2final6 44 66 IPR013087 -
Phco2g01961 155 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Phco2g01961 155 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Phco2g01961 155 Gene3D Classic Zinc Finger 42 114 - -
Phco2g01961 155 Pfam C2H2-type zinc finger 44 69 - -
Phco2g01961 155 Pfam C2H2-type zinc finger 92 116 - -
Phco2g01961 155 SUPERFAMILY beta-beta-alpha zinc fingers 44 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01961 Phco-Chr2 50297216 50297683 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g01961 zf-C2H2_6 1.6e-09 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01961 2 50297216 50297683 Phco6g00790 6 7807368 7807829 PCT