Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01960 ATGAAGAGACAGAGAGAAATGGAGGGGTTAGCAACCATAGATTTGGCAAATTGTCTAATGCTTCTGTCTTGCCCCCAACAAAAGAAGTTACAACCAAAACATCTTGAGGGTGTGGAATTTGAATGCAAGACATGCAACAGAAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGGTATGAACACAAAGCAGATGCTATGTCTCTAAGTTTGGGAATTAATAAACCCAAAATGCACGAGTGTACCATTTGTGGACAAGAATTCTCATTGGGACAGGCACTTGGAGGCCACATGAGAAGACATAGAGCTTCCATCAAAGACCATTTTTCTTCAATTAACCATGTTGCACAAGTACCAGTTTTGAAAAGATCAAATAGCTCCAGGGGTATGTGCATGGACTTGAACCTAACACCATTAGAGAATGACTTCAAGTTATTGTTTGGAAAGATGGCACCGAATGTCGGTGCCCTAGTCTAG 507 0.4241 MKRQREMEGLATIDLANCLMLLSCPQQKKLQPKHLEGVEFECKTCNRKFSSFQALGGHRASHKRSKLEGYEHKADAMSLSLGINKPKMHECTICGQEFSLGQALGGHMRRHRASIKDHFSSINHVAQVPVLKRSNSSRGMCMDLNLTPLENDFKLLFGKMAPNVGALV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01960 168 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Phco2g01960 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Phco2g01960 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Phco2g01960 168 SMART c2h2final6 89 111 IPR013087 -
Phco2g01960 168 SMART c2h2final6 40 62 IPR013087 -
Phco2g01960 168 Pfam C2H2-type zinc finger 40 64 - -
Phco2g01960 168 Pfam C2H2-type zinc finger 89 113 - -
Phco2g01960 168 PANTHER ZINC FINGER PROTEIN ZAT5 12 151 - -
Phco2g01960 168 SUPERFAMILY beta-beta-alpha zinc fingers 40 111 IPR036236 -
Phco2g01960 168 Gene3D Classic Zinc Finger 38 111 - -
Phco2g01960 168 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01960 Phco-Chr2 50292861 50293367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco2g01960 zf-C2H2_6 7.5e-10 CL0361