Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01925 ATGACCGCCGTTGCCGGATACCCTGCCGGAAGCTCGCCGTTTGCCACTCGCGCTTTCAGCCTTCTCTCTCCTCCTGACGATGCTCAACGCCGGTGTCGCCTGCGGCTAAAGAGAATGCCGGTGTCGGTCCTCTTCCTCCTTGCTTTTCTCAACTTGCTTTTCTCTCCCCAAGTGAAGTCGTTTTCTTTGAGTGTGTCATTTGCTTCATCAGAACAAGCTAAAATGTGGTTTGTTAAACCTTCTTCTGGACCTTCTTCTGCACCCATTCCATCTCCAAATCATCAAGGTCCTTACATGACTCCAAGACAGAGACATCGTTATCGTCACCATCACCATCACAGCATGAGACCTTATGCAGTGGCTCCACCTCCTTCAAAAGACCAAGCTTGTGACCAAATCTGTACTGAACCGCTTACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAGGTCCGACTTACACTGGATGTAGCACCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGAATCAAATTGCATTAGGCACGTATCTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGACAGTCAAAATCAGGGAAGAACTGTTGTTGATATTAACTTGGTTCCGCTGGGAGAGAAATTTGACAATACTACTGCAGCTTTGACATATGAGAGGTTTTGGCACAAGAAGGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCTGTTGTGTACATTACTTATCCAGGAATGCCATCTTCGCCCCCATATGGATCTTTTGTTGGGAGTGGTCCCAGCCAAAGTGTTGAGGGCATTCTTCCGGTCAGTGCCAACTTTGTTAGCAAGAACCAGAAAATGAATGTCAGGACCATAATCATCATTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTCGGAGCATTTTCAATTATTTTGAAATGGAGGAAGAGTAGGAGACCATCGAGTGCTGTTGGCCCTGCATTCACATCATCTCTGAACAAGAGATCAGGCTTGGGGTCTATGTTGTCAAGCAGTATTACAAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGAGAGTACTGGGCGAAGGAGGATTTGGACGTGTTTATAGTGGAACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTGCTAACAAGAGATAATCAGAATGGAGACCGAGAATTTATTGCAGAGGTTGAGATGCTAAGCCGTTTGCATCATCGAAATCTAGTGAAACTGATTGGTATATGCATTGAGGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTCGAGTCACATCTGCATGGTGATGACAAGATAAAGGGGATGCTTGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCAAGAGGATTGGCCTATCTTCACGAGGATTCCAATCCCCGTGTAATTCATCGAGACTTTAAAGCTAGTAACGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGGTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGAGTGATGGGAACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGGCATTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCAATGTTGACCAGTAGAGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCAATCGCTTCAATGTGTGTTCACACGGAGGTTACACAGAGACCCTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTAATATACAATGACACAGATGAGACATGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCCCAGGAGTCCGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGGTTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAAAACAGACCGTTTTCAACATCAAGCTTGATTGGAGATGAAATATCTTTAGCATTTAGGCATGGGAATAGATCAGGCCCCTTAAGAACAGTCCGAAGCAAGCTGTCCTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGTTACTGGGTTTAA 2361 0.4477 MTAVAGYPAGSSPFATRAFSLLSPPDDAQRRCRLRLKRMPVSVLFLLAFLNLLFSPQVKSFSLSVSFASSEQAKMWFVKPSSGPSSAPIPSPNHQGPYMTPRQRHRYRHHHHHSMRPYAVAPPPSKDQACDQICTEPLTSTPFGSPCGCVFPMKVRLTLDVAPYAVFPVMTELENQIALGTYLEQSQVKIMGATADSQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYITYPGMPSSPPYGSFVGSGPSQSVEGILPVSANFVSKNQKMNVRTIIIIALSSFVLLLVLVGAFSIILKWRKSRRPSSAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPMLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHTEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSAQESDFRGDLAPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLAFRHGNRSGPLRTVRSKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01925 786 CDD STKc_IRAK 389 658 - -
Phco2g01925 786 Gene3D Phosphorylase Kinase; domain 1 354 458 - -
Phco2g01925 786 Gene3D Transferase(Phosphotransferase) domain 1 459 680 - -
Phco2g01925 786 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Phco2g01925 786 ProSiteProfiles Protein kinase domain profile. 383 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco2g01925 786 PANTHER OS01G0750732 PROTEIN 122 677 - -
Phco2g01925 786 MobiDBLite consensus disorder prediction 83 122 - -
Phco2g01925 786 SUPERFAMILY Protein kinase-like (PK-like) 361 658 IPR011009 -
Phco2g01925 786 Pfam Protein tyrosine and serine/threonine kinase 385 655 IPR001245 GO:0004672|GO:0006468
Phco2g01925 786 FunFam receptor-like serine/threonine-protein kinase ALE2 356 458 - -
Phco2g01925 786 MobiDBLite consensus disorder prediction 101 116 - -
Phco2g01925 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Phco2g01925 786 MobiDBLite consensus disorder prediction 765 786 - -
Phco2g01925 786 FunFam Receptor-like serine/threonine-protein kinase ALE2 459 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01925 Phco-Chr2 49854141 49860685 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Phco2g01925 PK_Tyr_Ser-Thr 4.4e-48 CL0016